I'm using batchspawner==0.8.0rc0. I can open an issue on the github repo.
Carol Willing <mailto:[email protected]>
April 20, 2018 6:42 PM
Hi Evan,
Which version of batchspawner are you
using? https://github.com/jupyterhub/batchspawner/releases
Feel free to open an issue at the batchspawner or jupyterhub repo and
we can continue troubleshooting there too :-)
Carol
On Friday, April 20, 2018 at 3:33:22 PM UTC-7, Evan Clark wrote:
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Thomas Kluyver <mailto:[email protected]>
April 20, 2018 4:23 PM
I'm not familiar with how Slurm works, but I'd guess that it's running
the job in a context which doesn't have access to that directory;
either it's not really running as that user, or it's running after the
user has 'logged out', so the directory has been deleted. The simplest
workaround is to unset the XDG_RUNTIME_DIR environment variable; it
should use a fallback directory instead.
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Evan Clark <mailto:[email protected]>
April 20, 2018 10:55 AM
When attempting to use batchspawner with slurm I get the following
error and I'm not sure how to resolve it. It is similar to the
XDG_Environment variable issue some users have reported, however it is
inserting the proper UID for the user that is spawning a notebook. The
run folder with the proper UID does have read and execute permissions
for the individual user so that doesn't appear to be the issue either.
File
"/var/web_services/galaxy/jupyter_conda/bin/jupyterhub-singleuser",
line 6, in <module>
main()
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/jupyterhub/singleuser.py",
line 455, in main
return SingleUserNotebookApp.launch_instance(argv)
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/jupyter_core/application.py",
line 266, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/traitlets/config/application.py",
line 657, in launch_instance
app.initialize(argv)
File "<decorator-gen-7>", line 2, in initialize
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/traitlets/config/application.py",
line 87, in catch_config_error
return method(app, *args, **kwargs)
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/notebook/notebookapp.py",
line 1505, in initialize
self.init_configurables()
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/notebook/notebookapp.py",
line 1209, in init_configurables
connection_dir=self.runtime_dir,
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/traitlets/traitlets.py",
line 556, in __get__
return self.get(obj, cls)
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/traitlets/traitlets.py",
line 535, in get
value = self._validate(obj, dynamic_default())
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/jupyter_core/application.py",
line 99, in _runtime_dir_default
ensure_dir_exists(rd, mode=0o700)
File
"/var/web_services/galaxy/jupyter_conda/lib/python3.6/site-packages/jupyter_core/utils/__init__.py",
line 13, in ensure_dir_exists
os.makedirs(path, mode=mode)
File "/var/web_services/galaxy/jupyter_conda/lib/python3.6/os.py",
line 210, in makedirs
makedirs(head, mode, exist_ok)
File "/var/web_services/galaxy/jupyter_conda/lib/python3.6/os.py",
line 220, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/run/user/1261'
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