Dan, Thanks. I am using R 2.3.1 RC.
I tried the workflow you sent..but it didn?t work either. Attached is the error message I got..I downloaded the new ImageJ and replaced the ij.jar in /Applications/kepler-1.0.0beta1/lib/jar, restarted Kepler and tried to run the workflow, but still no success.. Thanks, Jorge On 6/16/06 1:58 PM, "Dan Higgins" <higgins at nceas.ucsb.edu> wrote: > Hello Jorge, > > Sorry that you are having a problem with Kepler, (but thanks for > reporting the problem). I thought that having X11 open and setting the > DISPLAY problem avoided this problem for Mac PPC machines. It seems to > work on machines in use here, but obviously not for you. [Incidently, > interfacing with X11 is a known problem for the new Mac Intel machines, > although we are not sure why.] I'll have to dig into this to see if I > can find the problem. What version of R is installed on you Mac? [Kepler > launches R the same way as you would by entering 'R' on the command line.] > > The problem is related to the fact that R on the Mac uses some X11 > code for the jpeg display device, and I picked that device for the > Kepler RExpression actor because we could display jpegs easily in Kepler > on Windows, Mac, and Linux. A better display device for the Mac would be > a PDF device (since that is handled natively), and I have been looking > at changing the default behavior in Kepler. [Note that RExpression > actors work on the Mac if you disable the 'Graphics Output' parameter > and just look at text output] > > Attached is an example Kepler workflow showing how to use a 'pdf' > command within an R script to override the default setup and display the > pdf file using an IJMacro actor. Note that this workflow will not > execute with the Kepler beta1 release until you replace the ij.jar in > the $KEPLER/lib/jar/ directory with an updated version of this ImageJ > jar (see http://rsb.info.nih.gov/ij/download.html and get the 1.36 version). > > Dan Higgins > > > > > Jorge A. Ahumada wrote: >> > Hello, >> > >> > I am interested in using Kepler for creating workflows with R. I have a MAC >> > 10.4.6 PPC Dual G5 and downloaded the beta 6.1 of Kepler. When attempting >> to >> > run the linear regression workflow I get this error: >> > >> > [R]> setwd('/Users/jorge') >> > [R]> jpeg(filename = '1150472825782.jpg',width = 480, height = 480, >> > pointsize = 12,quality = 75, bg = 'white') >> > >> > Erro en X11(paste(\"jpeg::\", quality, \":\", filename, sep = \"\"), width, >> > : >> > no fue posible iniciar el dispositivo JPEG >> > Adem?s: Warning message: >> > no fue posible abrir la conecci?n con el dispositivo X11 '' >> > Ejecuci?n interrumpida >> > >> > X11 is open and I typed setenv DISPLAY localhost:0.0 >> > >> > Seems that the X11 command has the wrong syntax for Mac or Linux: >> > X11(paste(/"jpeg::/". Etc..) >> > >> > How do I change it? Is this the problem..Any ideas? >> > >> > Thanks, >> > >> > Jorge >> > > -- Jorge A. Ahumada, Ph.D. Technical Director, TEAM Center for Applied Biodiversity Science Conservation International 1919 M Street, NW Suite 600 Washington, DC 20036-3521 Ph: 202-912-1516 j.ahumada at conservation.org http://www.teaminitiative.org/ -------------- next part -------------- An HTML attachment was scrubbed... URL: http://mercury.nceas.ucsb.edu/ecoinformatics/pipermail/kepler-users/attachments/20060616/f3a99517/attachment-0001.htm -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/jpeg Size: 16610 bytes Desc: not available Url : http://mercury.nceas.ucsb.edu/ecoinformatics/pipermail/kepler-users/attachments/20060616/f3a99517/attachment-0001.jpg
