Hi Ben, After a reboot I got it to work this morning. I really thought that a new process (launched from eclipse) would grab the updated PATH environment variable but apparently not. I'm still wondering exactly what tripped me but as long as it now works... Thanks.
-----Original Message----- From: ben leinfelder [mailto:[email protected]] Sent: Friday, 29 May 2009 4:45 AM To: Perraud, Jean-Michel (CLW, Black Mountain) Cc: kepler-users at kepler-project.org Subject: Re: [kepler-users] Unable to run the RExpression actor Jean-Michel, I've updated my [Mac] to use R 2.9.0 with no ill effects. I will try on a virtual XP box next. Can you include the stacktrace you are seeing when you run the workflow with the R expression? The actual workflow might also help me track down any problems. Thanks, -ben On May 28, 2009, at 2:51 AM, <Jean-Michel.Perraud at csiro.au> <Jean-Michel.Perraud at csiro.au > wrote: > Hi, > > Having a new workstation just today I just checked out from scratch > the kepler trunk ('kepler' suite), compiled and ran with no hitch > until I run a workflow with an R actor. > I have installed R 2.9.0 and the R application directory is > definitely in the PATH environment variable. > For information I am running a WindowsXP 32 bit system with the JDK > 1.6.0_13. > Debugging from Eclipse I gather that the R process seems sucessfully > created. The exception occurs when writing input to the buffer (see > below). The R expression is simply print(c(1,2)). > I think I have the same setup than previously (apart from R 2.7.X). > Any advice would be appreciated. > > Regards > ---------- > org.ecoinformatics.seek.R.Rexpression > // > try { > > _inputBufferedWriter.write(script); > > _inputBufferedWriter.flush(); // IOException, "The pipe is being > closed", line 797 > > _inputBufferedWriter.close(); > > } catch (IOException ex) { > > throw new IllegalActionException(this, ex, > > "Problem writing input. " + noRErrorMessage); > > _______________________________________________ > Kepler-users mailing list > Kepler-users at kepler-project.org > http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >
