Hi Josep, I'm unable to replicate this problem. I've created a simple workflow and tried:
./kepler.sh -runwf -nogui -ExecutionId 77 -namejob 'SEPT09' - anotherVar 66 /Users/derik/KeplerData/workflows/MyWorkflows/testwf \[0\].kar and this works for me. I've set keepResultantRunKars true in reporting's configuration.xml, and I'm seeing the result kar in workflow-runs, and it looks good. I'm at kepler revision 25100. Are you able to send me your kar to test? Derik On Jul 13, 2010, at 1:31 PM, Josep Morer Mu?oz wrote: > Hi all, > > Can anyone reply to my question? > > Thanks > > ---------- Forwarded message ---------- > From: Josep Morer Mu?oz <josep.morer at gmail.com> > Date: 2010/6/28 > Subject: How to pass String and File Parameters using Command Line > To: Kepler Users <kepler-users at kepler-project.org> > > > Hi all, > > I am having problems when I try to execute a KAR using the command > line with String and File Parameters. As I understand, when a > parameter is a number, you put -parameter 2 f.e and if it is a > string or a file path, you put -parameter "string". However, for > string and file parameters does not work because I am having errors > like this: > > urops at ubuntu:~/KeplerLastVersion$ ./kepler.sh -runwf -nogui - > stepsrmsd 42 -ExecutionId 35 -namejob 'SEPT09' -numclustersrmsd 5 / > home/urops/CBI/Projectes/2/Execucions/35/KeplerMDAnalyser-Module1- > RMSD-CBI[0].kar > [null] /home/urops/KeplerLastVersion > [null] Found OS Extension file: /home/urops/KeplerLastVersion/ > apple-extensions/module-info/osextension.txt > [null] Ran additional initialization for module gui from class > org.kepler.module.gui.Initialize > [null] Ran additional initialization for module tagging from > class org.kepler.module.tagging.Initialize > [null] Ran additional initialization for module provenance from > class org.kepler.module.provenance.Initialize > [null] common tabpane configuration overridden by workflow-run- > manager > [null] Ran additional initialization for module > workflowrunmanager from class > org.kepler.module.workflowrunmanager.Initialize > [null] common tabpane configuration overridden by reporting > [null] Ran additional initialization for module reporting from > class org.kepler.module.reporting.Initialize > [null] loading: org.kepler.KeplerConfigurationApplication args: > ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit - > stepsrmsd 42 -ExecutionId 35 -namejob SEPT09 -numclustersrmsd > [null] invoking: org.kepler.KeplerConfigurationApplication.main > [null] Kepler Initializing... > [null] Command failed > [null] java.lang.Exception: Failed to parse "ptolemy/configs/ > kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 - > ExecutionId 35 -namejob SEPT09 -numclustersrmsd" > [null] at > ptolemy > .actor > .gui > .ConfigurationApplication > .throwArgsException(ConfigurationApplication.java:651) > [null] at > org > .kepler > .KeplerConfigurationApplication > .<init>(KeplerConfigurationApplication.java:288) > [null] at > org > .kepler > .KeplerConfigurationApplication > .main(KeplerConfigurationApplication.java:582) > [null] at > sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > [null] at > sun > .reflect > .NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > [null] at > sun > .reflect > .DelegatingMethodAccessorImpl > .invoke(DelegatingMethodAccessorImpl.java:43) > [null] at java.lang.reflect.Method.invoke(Method.java:616) > [null] at org.kepler.Kepler.load(Kepler.java:362) > [null] at org.kepler.Kepler.load(Kepler.java:380) > [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) > [null] at org.kepler.Kepler.main(Kepler.java:210) > [null] Caused by: ptolemy.kernel.util.IllegalActionException: > Cannot set parameter -numclustersrmsd when no value is given. > [null] at > org > .kepler > .KeplerConfigurationApplication > .parseArgs(KeplerConfigurationApplication.java:308) > [null] at > org > .kepler > .KeplerConfigurationApplication > .<init>(KeplerConfigurationApplication.java:193) > [null] ... 9 more > [null] java.lang.Exception: Failed to parse "ptolemy/configs/ > kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 - > ExecutionId 35 -namejob SEPT09 -numclustersrmsd" > [null] at > ptolemy > .actor > .gui > .ConfigurationApplication > .throwArgsException(ConfigurationApplication.java:651) > [null] at > org > .kepler > .KeplerConfigurationApplication > .<init>(KeplerConfigurationApplication.java:288) > [null] at > org > .kepler > .KeplerConfigurationApplication > .main(KeplerConfigurationApplication.java:582) > [null] at > sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > [null] at > sun > .reflect > .NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > [null] at > sun > .reflect > .DelegatingMethodAccessorImpl > .invoke(DelegatingMethodAccessorImpl.java:43) > [null] at java.lang.reflect.Method.invoke(Method.java:616) > [null] at org.kepler.Kepler.load(Kepler.java:362) > [null] at org.kepler.Kepler.load(Kepler.java:380) > [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) > [null] at org.kepler.Kepler.main(Kepler.java:210) > [null] Caused by: ptolemy.kernel.util.IllegalActionException: > Cannot set parameter -numclustersrmsd when no value is given. > [null] at > org > .kepler > .KeplerConfigurationApplication > .parseArgs(KeplerConfigurationApplication.java:308) > [null] at > org > .kepler > .KeplerConfigurationApplication > .<init>(KeplerConfigurationApplication.java:193) > [null] ... 9 more > Exception in thread "main" Java returned: 1 > at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java: > 105) > at org.kepler.build.runner.Kepler.main(Kepler.java:78) > Caused by: Java returned: 1 > at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) > at org.kepler.build.Run.runSuite(Run.java:298) > at org.kepler.build.Run.run(Run.java:202) > at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java: > 101) > ... 1 more > --- Nested Exception --- > Java returned: 1 > at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) > at org.kepler.build.Run.runSuite(Run.java:298) > at org.kepler.build.Run.run(Run.java:202) > at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java: > 101) > at org.kepler.build.runner.Kepler.main(Kepler.java:78) > > I get this error when I try to pass a String or File parameter with > "". Any idea? > > Thanks > -- > Josep > > > > -- > Josep > _______________________________________________ > Kepler-users mailing list > Kepler-users at kepler-project.org > http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users ---------- Derik Barseghian http://nceas.ucsb.edu/ecoinfo | office: 805-893-5127 Rm 3411, Marine Science Research Building, UCSB Santa Barbara, CA, 93106-6150
