I think the problem I am having is that it is trying to validate the XML against http://ptolemy.eecs.berkeley.edu/xml/dtd/MoML_1.dtd, and my proxy is probably in the way. Although I set the proxy in the kepler.bat file on the command-line. I am not sure why it isn't going through. Chris
[null] java.net.ConnectException: Connection timed out: connect [null] at java.net.PlainSocketImpl.socketConnect(Native Method) [null] at java.net.PlainSocketImpl.doConnect(Unknown Source) [null] at java.net.PlainSocketImpl.connectToAddress(Unknown Source) [null] at java.net.PlainSocketImpl.connect(Unknown Source) [null] at java.net.SocksSocketImpl.connect(Unknown Source) [null] at java.net.Socket.connect(Unknown Source) [null] at java.net.Socket.connect(Unknown Source) [null] at sun.net.NetworkClient.doConnect(Unknown Source) [null] at sun.net.www.http.HttpClient.openServer(Unknown Source) [null] at sun.net.www.http.HttpClient.openServer(Unknown Source) [null] at sun.net.www.http.HttpClient.<init>(Unknown Source) [null] at sun.net.www.http.HttpClient.New(Unknown Source) [null] at sun.net.www.http.HttpClient.New(Unknown Source) [null] at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient( Unknown Source) [null] at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unkn own Source) [null] at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown S ource) [null] at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Un known Source) [null] at org.apache.xerces.impl.XMLEntityManager.setupCurrentEntity(Un known Source) [null] at org.apache.xerces.impl.XMLEntityManager.startEntity(Unknown S ource) [null] at org.apache.xerces.impl.XMLEntityManager.startDTDEntity(Unknow n Source) [null] at org.apache.xerces.impl.XMLDTDScannerImpl.setInputSource(Unkno wn Source) [null] at org.apache.xerces.impl.XMLDocumentScannerImpl$DTDDispatcher.d ispatch(Unknown Source) [null] at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDoc ument(Unknown Source) [null] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown So urce) [null] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown So urce) [null] at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) [null] at org.apache.xerces.parsers.DOMParser.parse(Unknown Source) [null] at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Sour ce) [null] at org.kepler.moml.KeplerMetadataExtractor.extractActorMetadata( KeplerMetadataExtractor.java:101) [null] at org.kepler.objectmanager.cache.ActorCacheObject.<init>(ActorC acheObject.java:141) [null] at org.kepler.kar.handlers.ActorMetadataKAREntryHandler.cache(Ac torMetadataKAREntryHandler.java:169) [null] at org.kepler.kar.KARFile.cache(KARFile.java:876) [null] at org.kepler.kar.KARFile.cacheKARContents(KARFile.java:591) [null] at org.kepler.kar.SaveKAR.saveToCache(SaveKAR.java:184) [null] at org.kepler.gui.kar.ExportArchiveAction.actionPerformed(Export ArchiveAction.java:344) [null] at javax.swing.AbstractButton.fireActionPerformed(Unknown Source ) [null] at javax.swing.AbstractButton$Handler.actionPerformed(Unknown So urce) [null] at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown So urce) [null] at javax.swing.DefaultButtonModel.setPressed(Unknown Source) [null] at javax.swing.AbstractButton.doClick(Unknown Source) [null] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source ) [null] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( Unknown Source) [null] at java.awt.Component.processMouseEvent(Unknown Source) [null] at javax.swing.JComponent.processMouseEvent(Unknown Source) [null] at java.awt.Component.processEvent(Unknown Source) [null] at java.awt.Container.processEvent(Unknown Source) [null] at java.awt.Component.dispatchEventImpl(Unknown Source) [null] at java.awt.Container.dispatchEventImpl(Unknown Source) [null] at java.awt.Component.dispatchEvent(Unknown Source) [null] at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Sou rce) [null] at java.awt.LightweightDispatcher.processMouseEvent(Unknown Sour ce) [null] at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) [null] at java.awt.Container.dispatchEventImpl(Unknown Source) [null] at java.awt.Window.dispatchEventImpl(Unknown Source) [null] at java.awt.Component.dispatchEvent(Unknown Source) [null] at java.awt.EventQueue.dispatchEvent(Unknown Source) [null] at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown S ource) [null] at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Sour ce) [null] at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown S ource) [null] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [null] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [null] at java.awt.EventDispatchThread.run(Unknown Source) [null] Error parsing Actor KAR DOM "<?xml version="1.0"?> [null] <!DOCTYPE entity PUBLIC "-//UC Berkeley//DTD MoML 1//EN" [null] "http://ptolemy.e...": Connection timed out: connect [null] WARN (org.kepler.objectmanager.cache.CacheManager:insertObject:237) KAREntry has no lsid: null On Jul 19, 2010 5:50pm, chrisweed at gmail.com wrote: > Thanks, I'll try that. > Chris > On Jul 19, 2010 5:49pm, Jianwu Wang jianwu at sdsc.edu> wrote: > > > > > > > > > > > > > > Hi Chris, > > > > > > > > If you right-click the actor and choose 'Save Archive (KAR)...', a > > dialog called 'Add Semantic Types?' will show up. If you click 'yes', > > you can choose corresponding semantic type for this actor. Then another > > dialog will show up to save the kar file of this actor. The default > > location is at $KeplerData/workflows/MyWorkflows. If you save the kar > > file in $KeplerData/workflows/MyWorkflows directory, you can search and > > find the actor in the ontology-tree window. It will show up under both > > its ontology annotations and MyWorkflows icon. > > > > Best wishes > > > > Sincerely yours > > > > Jianwu Wang > > jianwu at sdsc.edu > > http://users.sdsc.edu/~jianwu/ > > > > Assistant Project Scientist > > Scientific Workflow Automation Technologies (SWAT) Laboratory > > San Diego Supercomputer Center > > University of California, San Diego > > San Diego, CA, USA > > > > > > On 7/19/2010 2:34 PM, chrisweed at gmail.com wrote: > > What is the correct method for adding an actor to the > > local repository, so it shows up in the ontology-tree window? > > > > I didn't see how to do this in the user guide. I tried the old "upload > > to repository" method, but that didn't seem to do anything. > > > > Chris > > > > > > _______________________________________________ > > Kepler-users mailing list > > Kepler-users at kepler-project.org > > http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/attachments/20100719/1bc82a19/attachment-0001.html>
