I'm just curious, what are the problems with ant force-ptolemy compile?
Also, Ptolemy has and Export PDF feature that works if the configuration has
<!-- Add support for exporting PDFs. -->
<!-- Used in BasicGraphFrame.java -->
<property name="_exportPDFActionClassName"
class="ptolemy.data.expr.StringParameter"
value="ptolemy.vergil.basic.export.itextpdf.ExportPDFAction"/>
and com.itextpdf.text.Document is in the path.
$PTII/configure looks for
$PTII/vendors/misc/itext/iText.jar
iText.jar is AGPL'd, which is why it is not part of the default.
To experiment with this, I suggest downloading the Ptolemy II
development tree, see
http://chess.eecs.berkeley.edu/ptexternal
_Christopher
On 4/17/12 11:48 AM, Albert Vilà Picas wrote:
Great job Dan!
It works! Thank you a lot again! The revision 29738 is ok.
I have some R warnings and with Ptolemy at revision 63376 I still have
some troubles with ant force-ptolemy compile
but the generation of the PDF is doing it as well.
If I have new suggestions or problems I'll notice them.
Thanks!
Albert
2012/4/17 Daniel Crawl <[email protected]
<mailto:[email protected]>>
I fixed the problem and you can now specify parameters when
executing KAR workflows:
kepler -runkar -nogui [-param1 value1 ...] workflow.kar
--dan
On 4/17/12 5:57 AM, Josep Maria Campanera Alsina wrote:
Dear All,
This is Josep M. Campanera who has been using kepler for
bioinformatics. Now I'm developing with Albert Vilà (and
others) a web
front-end for kepler that we will make available once the
first tests
are satisfactory. Additionally we are also developing a perl
actor for
kepler.
As mentioned by Albert, It is crucial the command line
execution with
parameters of kar files for continuing our project. Dan says that
there is a bug which impedes the execution of kar files by
means of
command line execution with parameters. In line with Dan's
comments,
we would like to know aproximately when this bug is going to be
fixed.
1) Are you thinking of days, weeks or months?
2) In case we need to wait for a long period, which is the best
strategy to surpass that drawback meanwhile?
Thank you very much,
Josep M. Campanera,
Hi Albert,
I'll look into fixing this. It would be nice to have a
consistent set of
command-line options for executing momls and kars.
--dan
On 4/16/12 3:00 AM, Albert Vilà Picas wrote:
Hi all,
I have read in other e-mails that now is not possible to
execute .kar
workflows with parameters?
We run a command line KAR with reporting layout added
running -runwf -nogui
[-param value]*.
I have tried also with -runkar and I have the same error.
Is that a Ptolemy error that is not suitable? We're doing
a great project
with Kepler
and is necessary to run command line kar wf changing the
value of the input
parameters.
Here is the stack trace:
[null] common tabpane configuration overridden by
reporting
[null] Ran additional initialization for module
reporting from class
org.kepler.module.reporting.Initialize
[null] loading:
org.kepler.KeplerConfigurationApplication args:
ptolemy/configs/kepler/ConfigNoGUIWithCache.xml
-runThenExit -epochs 100
/home/sbi/sbi-services/sbi-home/Temporal/MLRAlbert.kar
[null] invoking:
org.kepler.KeplerConfigurationApplication.main
[null] Kepler Initializing...
[null] Unsupported file type or connection not
available:
file:/home/sbi/sbi-services/sbi-home/Temporal/MLRAlbert.kar
[null] Command failed
[null] java.lang.Exception: Failed to parse
"ptolemy/configs/kepler/ConfigNoGUIWithCache.xml
-runThenExit -epochs 100
/home/sbi/sbi-services/sbi-home/Temporal/MLRAlbert.kar"
[null] at
ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:791)
[null] at
org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:339)
[null] at
org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:639)
[null] at
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[null] at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
[null] at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[null] at
java.lang.reflect.Method.invoke(Method.java:616)
[null] at org.kepler.Kepler.load(Kepler.java:445)
...
Note that with the same workflow.kar without parameters
runs perfectly
keeping the results and generating the .PDF from reporting.
We need that the workflow must be a .kar and not an .xml
Thank you very much
--Albert
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--
Christopher Brooks, PMP University of California
CHESS Executive Director US Mail: 337 Cory Hall
Programmer/Analyst CHESS/Ptolemy/Trust Berkeley, CA 94720-1774
ph: 510.643.9841 (Office: 545Q Cory)
home: (F-Tu) 707.665.0131 cell: 707.332.0670
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