Nachiket, Is the jar file you are trying to execute a Kepler instance? If so, you should probably use the shell script that we've developed which allows you to pass in kar files.
https://kepler-project.org/developers/reference/executing-kepler-from-the-command-line Matt On Tue, May 8, 2012 at 1:31 AM, Nachiket Kate < [email protected]> wrote: > Hi, > > Thanks Christopher for BCVTB. > I have another doubt regarding "JobCreator" actor in kepler. > I would like to run a java jar with certain parameters (inputs to java > jar) as a job on SGE, > > e.g. java -Xmx1024m -jar abc.jar -inputdir "some path" -outputdir "some > path" > > for this, I have provided the path of executable jar(here abc.jar) in > JobCreator's executable file field. This scenario works well if I didn't > provide jar parameters i.e. inputdir and outputdir but with these > parameters it's not working. > Is there any solution available for such scenarios? > > ~Nachiket > > -----Original Message----- > From: Christopher Brooks [mailto:[email protected]] > Sent: Friday, May 04, 2012 8:58 PM > To: Nachiket Kate > Cc: Michal Owsiak; Matt Jones; [email protected] > Subject: Re: [kepler-users] Socket streaming in Kepler > > Hi Nachiket, > Kepler uses Ptolemy II as its engine. > The Ptolemy II devel tree includes the Building Controls Virtual Test Bed > (BCVTB, http://simulationresearch.lbl.gov/bcvtb), which includes a way to > communicate subprocesses via BSD sockets or via the command line. There is > a paper at http://dx.doi.org/10.1080/19401493.2010.518631. > > I'm unsure of what you mean by "socket streaming" and whether this would > be compatible with the type of sockets used in BCVTB. If you are > interested, the thing to do would be to look at the paper and then download > BCVTB and see if it meets your needs. Getting BCVTB visible within Kepler > could be as simple as building Kepler using the devel tree and possibly > editing a few files so that ptII/lbnl is not excluded from the build. It > may also be necessary to run configure and make. > > _Christopher > > On 5/4/12 1:16 AM, Nachiket Kate wrote: > > Hi Michal, > > > > We have a bioinformatics pipeline and we need a streaming support for > > running its steps through socket streaming so is there any module or > add-on which we can use for our project or do we need to develop our own > actors for the same? > > > > Nachiket > > > > -----Original Message----- > > From: Michal Owsiak [mailto:[email protected]] > > Sent: Friday, May 04, 2012 11:35 AM > > To: Nachiket Kate > > Subject: Socket streaming in Kepler > > > > Hello Kate, > > > > are you referring to Serpens suite that can be found here: > > > > http://scilla.man.poznan.pl:8080/confluence > > > > Or do you have something else in mind? > > > > Michal > > > > -- > > Michal Owsiak<[email protected]> > > > > Institute of Bioorganic Chemistry PAS > > Poznan Supercomputing and Networking Center Noskowskiego 12/14, 61-704 > > Poznan, POLAND > > > > http://www.man.poznan.pl > > > > DISCLAIMER > > ========== > > This e-mail may contain privileged and confidential information which is > the property of Persistent Systems Ltd. It is intended only for the use of > the individual or entity to which it is addressed. If you are not the > intended recipient, you are not authorized to read, retain, copy, print, > distribute or use this message. If you have received this communication in > error, please notify the sender and delete all copies of this message. > Persistent Systems Ltd. does not accept any liability for virus infected > mails. > > _______________________________________________ > > Kepler-users mailing list > > [email protected] > > http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > -- > Christopher Brooks, PMP University of California > CHESS Executive Director US Mail: 337 Cory Hall > Programmer/Analyst CHESS/Ptolemy/Trust Berkeley, CA 94720-1774 > ph: 510.643.9841 (Office: 545Q Cory) > home: (F-Tu) 707.665.0131 cell: 707.332.0670 > > > DISCLAIMER > ========== > This e-mail may contain privileged and confidential information which is > the property of Persistent Systems Ltd. It is intended only for the use of > the individual or entity to which it is addressed. If you are not the > intended recipient, you are not authorized to read, retain, copy, print, > distribute or use this message. If you have received this communication in > error, please notify the sender and delete all copies of this message. > Persistent Systems Ltd. does not accept any liability for virus infected > mails. >
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