Hi Eduardo,
So you failed even just using 'SSH Session' actor? Did you get any
error or exception message? It's new to me for the two-factor
authentication. If you tell me how to reproduce it, I can dig into it
and check what went wrong.
Best wishes
Sincerely yours
Jianwu Wang, Ph.D.
[email protected]
http://users.sdsc.edu/~jianwu/
Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.
On 11/1/12 1:45 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE &
TECHNOLOGY INC] wrote:
Thanks. The workflow crashes kepler at a "type detection" step. So I
am trying just the SSH session step for starters. I am running in an
environment with two-factor authentication. So I authenticate ssh
with control master enabled hoping that subsequent ssh attempts by
kepler use the existing open connection. At the kepler workflow I
set up the ssh session with an identity file hoping it would use the
control master session, but it is failing to do so. Any thoughts on
this mode of operation?
Eduardo
From: Jianwu Wang <[email protected] <mailto:[email protected]>>
Date: Wednesday, October 31, 2012 5:50 PM
To: "Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY
INC]" <[email protected] <mailto:[email protected]>>
Cc: "[email protected]
<mailto:[email protected]>"
<[email protected] <mailto:[email protected]>>
Subject: Re: [kepler-users] Sample workflow using JobSubmission/JobManager
Hi Eduardo,
A sample workflow using JobSubmission/JobManager can be found at
https://code.kepler-project.org/code/kepler/trunk/workflows/SC06-Tutorial/JobSubmission.xml.
To use it in PBS environment, you just need to edit the 'JobManager'
parameter to be 'PBS'. Other parameters such as 'SimTarget' and
'JobScript' also need to be configured to fit your information.
Best wishes
Sincerely yours
Jianwu Wang, Ph.D.
[email protected]http://users.sdsc.edu/~jianwu/
Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.
On 10/31/12 2:22 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE &
TECHNOLOGY INC] wrote:
Does anyone have a sample workflow that exercises a PBS based HPC
environment that they would like to share?
Thanks.
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