Ok. I'll do my best. Here I follow the instructions from 
https://wiki.ubuntu.com/DebuggingKernelSuspend
1)As described above. The Macbook seems to suspend when closing the lid and 
then wakes again which is shown by the apple on the back och the lid lightning 
up

2) Closing the lid (but even doing it through the shut down menu in mate
and unity)

3) See 2

4) Attached

The rest follows.


** Attachment added: "wakeup"
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1616214/+attachment/4770119/+files/wakeup

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https://bugs.launchpad.net/bugs/1616214

Title:
   Macbook Air resumes immediately after suspend

Status in linux package in Ubuntu:
  Incomplete

Bug description:
  Based on https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1311724
  I am opening this bug to tackle the issue of a Macbook Air that
  resumes immediately after suspending.

  I have the exact same symptoms as those described in the first bug.
  The first suspend on battery power works without any issues. After
  that, even trying the 2x pm-suspend method doesn't work.

  Here's an excerpt from dmesg showing the suspend:

  [11363.316508] PM: Syncing filesystems ... done.
  [11363.683228] PM: Preparing system for sleep (mem)
  [11363.683388] Freezing user space processes ... (elapsed 0.002 seconds) done.
  [11363.685415] Freezing remaining freezable tasks ... (elapsed 0.001 seconds) 
done.
  [11363.686602] PM: Suspending system (mem)
  [11363.686629] Suspending console(s) (use no_console_suspend to debug)
  [11363.686839] sd 1:0:0:0: [sda] Synchronizing SCSI cache
  [11363.686890] sd 1:0:0:0: [sda] Stopping disk
  [11363.689056] R8188EU: INFO indicate disassoc
  [11364.057112] PM: suspend of devices complete after 370.364 msecs
  [11364.079232] PM: late suspend of devices complete after 22.117 msecs
  [11364.079400] thunderbolt 0000:07:00.0: suspending...
  [11364.079620] thunderbolt 0000:07:00.0: stopping RX ring 0
  [11364.079623] thunderbolt 0000:07:00.0: disabling interrupt at register 
0x38200 bit 12 (0x1001 -> 0x1)
  [11364.079628] thunderbolt 0000:07:00.0: stopping TX ring 0
  [11364.079631] thunderbolt 0000:07:00.0: disabling interrupt at register 
0x38200 bit 0 (0x1 -> 0x0)
  [11364.079633] thunderbolt 0000:07:00.0: control channel stopped
  [11364.079634] thunderbolt 0000:07:00.0: suspend finished
  [11364.080060] xhci_hcd 0000:00:14.0: System wakeup enabled by ACPI
  [11364.095334] pcieport 0000:05:00.0: quirk: cutting power to thunderbolt 
controller...
  [11364.506336] mba6x_bl: Invalid response at reg: 0x1 (len: 24)
  [11364.733532] mba6x_bl: failed to set brightness
  [11364.733583] PM: noirq suspend of devices complete after 654.350 msecs
  [11364.733853] ACPI: Preparing to enter system sleep state S3
  [11364.763238] ACPI : EC: EC stopped
  [11364.763238] PM: Saving platform NVS memory
  [11364.763240] Disabling non-boot CPUs ...
  [11364.763530] Broke affinity for irq 49
  [11364.764553] smpboot: CPU 1 is now offline
  [11364.776286] Broke affinity for irq 18
  [11364.776293] Broke affinity for irq 44
  [11364.776299] Broke affinity for irq 46
  [11364.776305] Broke affinity for irq 48
  [11364.776309] Broke affinity for irq 49
  [11364.777347] smpboot: CPU 2 is now offline
  [11364.787918] Broke affinity for irq 8
  [11364.787921] Broke affinity for irq 9
  [11364.787924] Broke affinity for irq 16
  [11364.787927] Broke affinity for irq 18
  [11364.787930] Broke affinity for irq 44
  [11364.787933] Broke affinity for irq 45
  [11364.787935] Broke affinity for irq 46
  [11364.787937] Broke affinity for irq 47
  [11364.787940] Broke affinity for irq 48
  [11364.787942] Broke affinity for irq 49
  [11364.787945] Broke affinity for irq 54
  [11364.788969] smpboot: CPU 3 is now offline
  [11364.805918] ACPI: Low-level resume complete
  [11364.806002] ACPI : EC: EC started
  [11364.806004] PM: Restoring platform NVS memory
  [11364.806415] Enabling non-boot CPUs ...
  [11364.826307] x86: Booting SMP configuration:
  [11364.826309] smpboot: Booting Node 0 Processor 1 APIC 0x2
  [11364.837869]  cache: parent cpu1 should not be sleeping
  [11364.838662] CPU1 is up
  [11365.018821] smpboot: Booting Node 0 Processor 2 APIC 0x1
  [11365.074966]  cache: parent cpu2 should not be sleeping
  [11365.075057] CPU2 is up
  [11365.273364] smpboot: Booting Node 0 Processor 3 APIC 0x3
  [11365.325736]  cache: parent cpu3 should not be sleeping
  [11365.350542] CPU3 is up
  [11365.354192] ACPI: Waking up from system sleep state S3
  [11365.430255] xhci_hcd 0000:00:14.0: System wakeup disabled by ACPI
  [11365.431123] pcieport 0000:06:03.0: quirk: waiting for thunderbolt to 
reestablish PCI tunnels...
  [11365.431125] pcieport 0000:06:04.0: quirk: waiting for thunderbolt to 
reestablish PCI tunnels...
  [11365.431219] pcieport 0000:06:05.0: quirk: waiting for thunderbolt to 
reestablish PCI tunnels...
  [11365.431309] pcieport 0000:06:06.0: quirk: waiting for thunderbolt to 
reestablish PCI tunnels...
  [11365.446161] thunderbolt 0000:07:00.0: resuming...
  [11365.446162] thunderbolt 0000:07:00.0: control channel starting...
  [11365.446165] thunderbolt 0000:07:00.0: starting TX ring 0
  [11365.446171] thunderbolt 0000:07:00.0: enabling interrupt at register 
0x38200 bit 0 (0x0 -> 0x1)
  [11365.446172] thunderbolt 0000:07:00.0: starting RX ring 0
  [11365.446177] thunderbolt 0000:07:00.0: enabling interrupt at register 
0x38200 bit 12 (0x1 -> 0x1001)
  [11365.446181] thunderbolt 0000:07:00.0: resetting switch at 0
  [11365.447441] thunderbolt 0000:07:00.0: 0: resuming switch
  [11365.452967] thunderbolt 0000:07:00.0: resume finished
  [11365.453101] PM: noirq resume of devices complete after 23.052 msecs
  [11365.457463] PM: early resume of devices complete after 4.341 msecs
  [11365.457833] pciehp 0000:06:05.0:pcie24: Timeout on hotplug command 0x1038 
(issued 11364396 msec ago)
  [11365.457837] pciehp 0000:06:03.0:pcie24: Timeout on hotplug command 0x1038 
(issued 11364396 msec ago)
  [11365.457869] pciehp 0000:06:04.0:pcie24: Timeout on hotplug command 0x1038 
(issued 11364396 msec ago)
  [11365.461824] pciehp 0000:06:06.0:pcie24: Timeout on hotplug command 0x1038 
(issued 11364400 msec ago)
  [11365.461845] rtc_cmos 00:02: System wakeup disabled by ACPI
  [11365.473860] sd 1:0:0:0: [sda] Starting disk
  [11365.547332] thunderbolt 0000:07:00.0: resetting error on 0:b.
  [11365.547342] thunderbolt 0000:07:00.0: 0:b: hotplug: scanning
  [11365.547343] thunderbolt 0000:07:00.0: 0:b: hotplug: no switch found
  [11365.547347] thunderbolt 0000:07:00.0: resetting error on 0:c.
  [11365.547353] thunderbolt 0000:07:00.0: 0:c: hotplug: scanning
  [11365.547354] thunderbolt 0000:07:00.0: 0:c: hotplug: no switch found
  [11365.801887] ata1: SATA link up 6.0 Gbps (SStatus 133 SControl 300)
  [11365.802162] ata1.00: unexpected _GTF length (8)
  [11365.802572] ata1.00: unexpected _GTF length (8)
  [11365.802696] ata1.00: configured for UDMA/133
  [11365.818069] MAC Address = ec:08:6b:1f:30:92
  [11366.202398] PM: resume of devices complete after 744.933 msecs
  [11366.202849] PM: Finishing wakeup.

  Something that seems notable regarding the policy min/med/max policy
  in in /sys/class/scsi_host/host1/link_power_management_policy when
  managed via powertop:

  If I try to toggle ' Enable SATA link power management for host1'
  after a suspend, powertop throws an error accessing the policy and
  shows 'null' in its output.

  cat /proc/acpi/wakeup
  Device        S-state   Status   Sysfs node
  P0P2    S3    *disabled
  EC      S4    *disabled  platform:PNP0C09:00
  HDEF    S3    *disabled  pci:0000:00:1b.0
  RP01    S3    *disabled  pci:0000:00:1c.0
  RP02    S3    *disabled  pci:0000:00:1c.1
  RP03    S3    *disabled  pci:0000:00:1c.2
  ARPT    S4    *disabled  pci:0000:03:00.0
  RP05    S3    *disabled  pci:0000:00:1c.4
  RP06    S3    *disabled  pci:0000:00:1c.5
  SPIT    S3    *disabled
  XHC1    S3    *enabled   pci:0000:00:14.0
  ADP1    S4    *disabled  platform:ACPI0003:00
  LID0    S4    *enabled   platform:PNP0C0D:00

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: linux-image-4.4.0-34-generic 4.4.0-34.53
  ProcVersionSignature: Ubuntu 4.4.0-34.53-generic 4.4.15
  Uname: Linux 4.4.0-34-generic x86_64
  NonfreeKernelModules: zfs zunicode zcommon znvpair zavl wl
  ApportVersion: 2.20.1-0ubuntu2.1
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC0:  jamon      5746 F.... pulseaudio
   /dev/snd/controlC1:  jamon      5746 F.... pulseaudio
  CurrentDesktop: Unity
  Date: Tue Aug 23 10:24:11 2016
  MachineType: Apple Inc. MacBookAir6,2
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.4.0-34-generic 
root=UUID=3a76e661-9bdd-49e1-8621-013477d0c438 ro 
cryptdevice=/dev/sda5:cryptoroot root=/dev/mapper/UBUNTU ro splash quiet 
vt.handoff=7
  RelatedPackageVersions:
   linux-restricted-modules-4.4.0-34-generic N/A
   linux-backports-modules-4.4.0-34-generic  N/A
   linux-firmware                            1.157.3
  SourcePackage: linux
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 02/22/2016
  dmi.bios.vendor: Apple Inc.
  dmi.bios.version: MBA61.88Z.0099.B22.1602221559
  dmi.board.asset.tag: Base Board Asset Tag#
  dmi.board.name: Mac-7DF21CB3ED6977E5
  dmi.board.vendor: Apple Inc.
  dmi.board.version: MacBookAir6,2
  dmi.chassis.type: 10
  dmi.chassis.vendor: Apple Inc.
  dmi.chassis.version: Mac-7DF21CB3ED6977E5
  dmi.modalias: 
dmi:bvnAppleInc.:bvrMBA61.88Z.0099.B22.1602221559:bd02/22/2016:svnAppleInc.:pnMacBookAir6,2:pvr1.0:rvnAppleInc.:rnMac-7DF21CB3ED6977E5:rvrMacBookAir6,2:cvnAppleInc.:ct10:cvrMac-7DF21CB3ED6977E5:
  dmi.product.name: MacBookAir6,2
  dmi.product.version: 1.0
  dmi.sys.vendor: Apple Inc.

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