I experience the same problem running lubuntu.16.04.
Before the hibernation I have /dev/mmcblk0p1 mounted.
Then I hibernate my system and just after comming back from hibernation system 
informs me that new filesystem was mounted - it is the one sitting on 
/dev/mmcblk0p1, which should not have been unmounted. Shortly after that, 
system gets corrupted with I/O errors in syslog and I have to do hard restart.

Ivan Garavito, did You manage to file a separate bug on that?

regards,
Mat

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https://bugs.launchpad.net/bugs/342096

Title:
  SD Card containing /home corrupted on resume

Status in linux package in Ubuntu:
  Incomplete

Bug description:
  Suspend/resume works on the Mini 9 as of the latest kernel update(it
  did not with the previous kernel). I have Jaunty installed with  /
  partition on the internal SSD and my /home folder on an SDHC card.
  When I resumed the home folder was not mounted and it appears that the
  filesystem was corrupted. Both / and /home are formatted in ext4. I
  ran dmesg to see what it said(image below) I then restarted and it ran
  fsck on boot and gave an error. I hit Ctrl+D and when I tried to log
  in my /home folder had not been mounted.

  I have attached pictures of dmesg | tail, fstab, and fsck.

  http://omploader.org/vMWQ5Yg
  http://omploader.org/vMWQ5Yw
  http://omploader.org/vMWQ5ZA

  This is with Jaunty, I am not sure what package the problem is with
  exactly. I don't know if it is ext4 or something else.

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