Is there anything else I should do to confirm whether or not this is an
upstream issue?

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https://bugs.launchpad.net/bugs/1654559

Title:
  r8101 unstable under 16.04.1 various kernels

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  Hardware: Intel D945GCLF with onboard Realtek R8101 LAN controller.
  OS: Ubuntu 16.04.1 LTS Server Edition - upgraded from 12.04 LTS

  By default Ubuntu chooses the r8169 module for this controller, which
  does not work correctly. (This has been an issue for a number of
  releases).

  Realtek provide a Linux driver at the below site:
  
http://www.realtek.com/downloads/downloadsView.aspx?Langid=1&PNid=14&PFid=7&Level=5&Conn=4&DownTypeID=3&GetDown=false

  With previous Ubuntu releases, compiling and using this module has
  worked perfectly, however with Ubuntu 16.04.1 I have had limited
  success.

  I have downloaded and compiled v1.030 and used it with a number of
  supported kernels but am getting similar issues with all.

  Note that I have also disabled IPv6 on this machine having seen
  indications that this may be causing the problem - I have seen no
  change in behaviour since doing this.

  Kernel 4.4.0-34-generic
   > Immediately following boot (or depmod r8101) the interface works and I can 
successfully communicate over the interface I have seen consistent downloads of 
6MB/s. At a seemingly random point later, connectivity will cease without 
warning. At this time the stats (RX/TX bytes/packets) in ifconfig cease to 
increase but the interface remains UP. A ping to the locally configured static 
IP returns successfully. "ifdown && ifup" does not fix the problem, but "rmmod 
&& depmod" does. The point at which the connectivity ceases does not appear to 
be consistent in either time or amount of data transferred.

  Will append further debugging information when I can get it off the
  server.

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