You are definivly right in that case 
a bug is allready opened(Bug #1073433 ) as i writing a comment to it
The normal user wants a clean shutdown or reboot and as I wrote its a dirty 
hack until this problem is resolved by the maintainers 

we know the schutdown process isn't working correctly as i can see 154 comments 
on this issue
and the @S60umountroot proccess is definitivly just before reboot/shutdown 
process

and as i understand it in the right way
@S20sendsigs should stop all running (upstart) processes after that we can 
@S31umountnfs.sh which is run before 
@S40umountfs which runs before
@S60umountroot which expects that there are no more running processes (or open 
files)(otherwise we can't remount or unmount) left and at last runs (on a 
normal system nothing is between them)
@S90reboot

if there ane running processes at that moment that root is remountet or
unmounted at shutdown or halt then fsck will complain on next boot.

you could check with adding /bin/ps aux >> /ps_schutdown.log just before line 
86 in the /etc/rc6/@S60umountroot script as you can see then there are running 
processes just before the umount happens. sometimes it is NM(with dhcpclient 
and dnsmasq etc) but not always
i tried even adding a sleep 60 there to give the runnings some time to end but 
that wasn't working either because of the respawning ones 

an killall5 -9 at that point shoulndt hurt because nfs and fs(tmpfs,run and so 
on) should be allready unmounted 
plymouth is maybe the culprit if it because it stays alive till the bitter end 
so we have to kill it at this time 
i dont mind to have a one or two second blackscreen just before the computer is 
off or reboots

an option could be that we load plymouth in to memory on shutdown so
that there is no disk accces on shutdown

just my 2ct's on this

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https://bugs.launchpad.net/bugs/1073433

Title:
  Ext4 corruption associated with shutdown of Ubuntu 12.10

Status in Upstart:
  Confirmed
Status in “linux” package in Ubuntu:
  Incomplete
Status in “network-manager” package in Ubuntu:
  Triaged
Status in “upstart” package in Ubuntu:
  Confirmed

Bug description:
  1. Format and label a target Ext4 partion using Ubuntu 12.04
  2. Install 64bit 12.10 OS using that target without reformatting it
  3. Shut down 
  4. Boot an alternate copy of Ubuntu
  5. Restart selecting the newly installed OS
  6. Login then shutdown
  6. Boot an alternate copy of Ubuntu
  7.Fsck the newly installed OS allowing corrections to be made

  Each time the the newly installed OS is executed and then shutdown,
  even if execution only consists of logging on, a subsequent fsck will
  FAIL.

  I used Acronis True Image Home 2013 to create an image of the newly
  installed 64-bit Ubuntu 12.10, so I can recreate the symptoms of Ext4
  filesystem corruption 100% of the time by restoring from the image,
  booting, logging on and shutting down.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.10
  Package: linux-image-3.5.0-17-generic 3.5.0-17.28
  ProcVersionSignature: Ubuntu 3.5.0-17.28-generic 3.5.5
  Uname: Linux 3.5.0-17-generic x86_64
  ApportVersion: 2.6.1-0ubuntu3
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  aguru      1871 F.... pulseaudio
   /dev/snd/controlC0:  aguru      1871 F.... pulseaudio
  CRDA: Error: command ['iw', 'reg', 'get'] failed with exit code 1: nl80211 
not found.
  Date: Tue Oct 30 22:24:54 2012
  HibernationDevice: RESUME=UUID=f22e3fa5-c5c5-41f1-ae5a-49390547cb67
  InstallationMedia: Ubuntu 12.10 "Quantal Quetzal" - Release amd64 (20121017.5)
  IwConfig:
   eth0      no wireless extensions.
   
   lo        no wireless extensions.
  MachineType: System manufacturer P5Q-E
  ProcEnviron:
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  ProcFB: 0 nouveaufb
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.5.0-17-generic 
root=UUID=ef2c78d5-783a-422a-88f7-27ec09dda0d1 ro quiet splash vt.handoff=7
  RelatedPackageVersions:
   linux-restricted-modules-3.5.0-17-generic N/A
   linux-backports-modules-3.5.0-17-generic  N/A
   linux-firmware                            1.95
  RfKill:
   
  SourcePackage: linux
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 04/06/2009
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: 2101
  dmi.board.asset.tag: To Be Filled By O.E.M.
  dmi.board.name: P5Q-E
  dmi.board.vendor: ASUSTeK Computer INC.
  dmi.board.version: Rev 1.xx
  dmi.chassis.asset.tag: Asset-1234567890
  dmi.chassis.type: 3
  dmi.chassis.vendor: Chassis Manufacture
  dmi.chassis.version: Chassis Version
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvr2101:bd04/06/2009:svnSystemmanufacturer:pnP5Q-E:pvrSystemVersion:rvnASUSTeKComputerINC.:rnP5Q-E:rvrRev1.xx:cvnChassisManufacture:ct3:cvrChassisVersion:
  dmi.product.name: P5Q-E
  dmi.product.version: System Version
  dmi.sys.vendor: System manufacturer

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