http://bugs.koha-community.org/bugzilla3/show_bug.cgi?id=9511

--- Comment #10 from Galen Charlton <gmcha...@gmail.com> ---
A comparison of the Zebra config of a database experiencing this problem shows
that it lacked the patch for bug 8665.  In particular, the Zebra record ID must
be taken (for MARC21) from the 999$c, but prior to the patch for 8665, it was
taken from the 001.

This also explains why I couldn't reproduce the problem myself -- I was using
master.

Try updating biblio-koha-indexdefs.xml and biblio-zebra-indexdefs.xml, then do
a full reindex of the bibs.  After that is done, I suspect that
rebuild_zebra.pl -z will start removing deleted bibs from the Zebra index.

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