I can reproduce this problem on a VM that runs Ubuntu 14.04. It seems to be due to a commit [2] by Michael that fixes plotting for matplotlib >= 1.4.0.
I think we should fix this to keep Kwant working well on current Ubuntu LTS as well. Do the matplotlib experts among you see a way to fix this other than having different code paths for different matplotlib versions?
[1] https://launchpadlibrarian.net/216909714/buildlog_ubuntu-trusty-i386.kwant_1.0.4-1~trusty_BUILDING.txt.gz [2] http://git.kwant-project.org/kwant/commit/?id=5e0f06d3a4081185e4a0e05a80a6495fde0acef1
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