Hi John, >From make V=1 make[1]: Entering directory `/mnt/b/projects/sciteam/jna/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/libmesh/libmesh' /bin/sh ./libtool --tag=CXX --mode=link CC -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp -o getpot_parse-opt src/apps/getpot_parse_opt-getpot_parse.o libmesh_opt.la-L/opt/cray/hdf5-parallel/1.8.9/cray/81/lib -L/u/sciteam/jfonseca/group/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/petsc/build-real/arch-linux2-cxx-opt/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys -Wl,-rpath,/u/sciteam/jfonseca/group/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/petsc/build-real/arch-linux2-cxx-opt/lib -lsuperlu_dist_3.3 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.9/cray/81/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/cray/papi/5.1.0.2/perf_events/no-cuda/lib-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/libsci/12.0.01/gnu/47/interlagos/lib -L/opt/fftw/ 3.3.0.2/interlagos/lib -L/opt/cray/hdf5-parallel/1.8.9/gnu/47/lib -L/opt/cray/xe-sysroot/4.1.40/usr/lib64 -L/opt/cray/xe-sysroot/4.1.40/lib64 -L/opt/cray/xe-sysroot/4.1.40/usr/lib/alps -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -L/opt/cray/atp/1.6.2/lib -lhdf5hl_fortran_gnu_parallel -lhdf5_fortran_gnu_parallel -lmpichf90_gnu_47 -lquadmath -lm -lmpichcxx_gnu_47 -lpapi -lrca -lAtpSigHCommData -lAtpSigHandler -lgfortran -lhdf5_hl_gnu_parallel -lhdf5_gnu_parallel -lz -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lfftw3_mpi -lfftw3f_mpi -lfftw3_threads -lfftw3f_threads -lfftw3 -lfftw3f -lmpich_gnu_47 -lmpl -lrt -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl libtool: link: CC -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp -o .libs/getpot_parse-opt src/apps/getpot_parse_opt-getpot_parse.o -Wl,-rpath -Wl,/u/sciteam/jfonseca/group/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/petsc/build-real/arch-linux2-cxx-opt/lib -Wl,-rpath -Wl,/opt/cray/hdf5-parallel/1.8.9/cray/81/lib ./.libs/libmesh_opt.so -L/opt/cray/hdf5-parallel/1.8.9/cray/81/lib -L/u/sciteam/jfonseca/group/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/petsc/build-real/arch-linux2-cxx-opt/lib -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/opt/cray/xe-sysroot/4.1.40/usr/lib64 -L/opt/cray/xe-sysroot/4.1.40/lib64 -L/opt/cray/xe-sysroot/4.1.40/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -L/opt/cray/atp/1.6.2/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys -lsuperlu_dist_3.3 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/cray/papi/ 5.1.0.2/perf_events/no-cuda/lib-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/libsci/12.0.01/gnu/47/interlagos/lib -L/opt/fftw/ 3.3.0.2/interlagos/lib -L/opt/cray/hdf5-parallel/1.8.9/gnu/47/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -lhdf5hl_fortran_gnu_parallel -lhdf5_fortran_gnu_parallel -lmpichf90_gnu_47 -lmpichcxx_gnu_47 -lpapi -lrca -lAtpSigHCommData -lAtpSigHandler /opt/gcc/4.7.2/snos/lib/../lib64/libgfortran.so /opt/gcc/4.7.2/snos/lib/../lib64/libquadmath.so -lhdf5_hl_gnu_parallel -lhdf5_gnu_parallel -lz -lscicpp_gnu -lsci_gnu_mp /opt/gcc/4.7.2/snos/lib/../lib64/libstdc++.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3_mpi.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3f_mpi.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3_threads.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3f_threads.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3.so /opt/fftw/ 3.3.0.2/interlagos/lib/libfftw3f.so -lm -lcray_memcpy -lmpich_gnu_47 -lmpl -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread /opt/gcc/4.7.2/snos/lib/../lib64/libgomp.so -lrt -lgcc_eh -ldl -pthread -fopenmp -Wl,-rpath -Wl,/u/sciteam/jfonseca/group/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/libmesh/lib -Wl,-rpath -Wl,/opt/gcc/4.7.2/snos/lib/../lib64 -Wl,-rpath -Wl,/opt/fftw/ 3.3.0.2/interlagos/lib /usr/bin/ld: attempted static link of dynamic object `./.libs/libmesh_opt.so' collect2: error: ld returned 1 exit status make[1]: *** [getpot_parse-opt] Error 1
Thanks, Jim On Wed, Aug 21, 2013 at 11:04 AM, John Peterson <[email protected]>wrote: > > > > On Wed, Aug 21, 2013 at 9:07 AM, Jim Fonseca <[email protected]> wrote: > >> Hi John, >> Yes, it's an email issue. Screenshot attached. >> > > I see. I think it might help if we could see the actual output of libtool, > so would you try running 'make V=1' and sending the output? > > On my machine, for instance, that prints: > > libtool: link: mpicxx -O2 -felide-constructors -funroll-loops > -fstrict-aliasing -Wdisabled-optimization -fopenmp -o > .libs/getpot_parse-opt src/apps/getpot_parse_opt-getpot_parse.o > -Wl,-bind_at_load ./.libs/libmesh_opt.dylib -L/opt/packages/tbb/lib > etc... > > so you can see exactly what linking command it's using. > > -- > John > -- Jim Fonseca, PhD Research Scientist Network for Computational Nanotechnology Purdue University 765-496-6495 www.jimfonseca.com ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
