On Nov 25, 2013, at 8:54 AM, Subramanya Sadasiva <[email protected]>
 wrote:

> Does this mean that the mpi stuff doesn’t work with cygwin?

No, it just means that for the machine I ran that on I didn't have much of a 
software stack installed. If you've got a decent MPI running under cygwin 
libMesh should be able to use it.
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