What version of libmesh are you using? Try grabbing the latest from github, 0.9.3 is really old.
> On Sep 11, 2014, at 4:38 AM, Eduardo Hernandez <eduardo.hernan...@csic.es> > wrote: > > > Hello, > > I am struggling with the installation of libmesh on a mac running mavericks > with clang/clang++. I successfully installed PETSc 3.5.2 and SLEPc 3.5.1. I > also installed open-mpi and vtk 5.10.1 (these last two via homebrew, and mpi > as a pre-requisite to PETSc and SLEPc). My configure options for libmesh are > as follows: > > configure --prefix=/usr/local > --with-vtk-include=/usr/local/opt/vtk5/include/vtk-5.10 > --with-vtk-lib=/usr/local/opt/lib/vtk-5.10/ --with-cc=mpicc --with-cxx=mpic++ > --enable-slepc --enable-petsc --enable-vtk --libdir=/usr/local > --includedir=/usr/local > > When I type make I get the following compilation errors: > > CXX src/numerics/libmesh_dbg_la-petsc_preconditioner.lo > src/numerics/petsc_preconditioner.C:86:14: error: no matching function for > call to 'PCSetOperators' > int ierr = PCSetOperators(_pc,_mat,_mat,SAME_NONZERO_PATTERN); > ^~~~~~~~~~~~~~ > src/numerics/petsc_preconditioner.C:301:16: note: in instantiation of member > function > 'libMesh::PetscPreconditioner<double>::init' requested here > template class PetscPreconditioner<Number>; > ^ > /usr/local/include/petscpc.h:148:29: note: candidate function not viable: > requires 3 arguments, but 4 were provided > PETSC_EXTERN PetscErrorCode PCSetOperators(PC,Mat,Mat); > ^ > 1 error generated. > make[1]: *** [src/numerics/libmesh_dbg_la-petsc_preconditioner.lo] Error 1 > make: *** [all-recursive] Error 1 > > I am at a loss as to how to solve this, and any help would be much > appreciated. > > A secondary problem is that I cannot get the configure stage to recognise > that vtk is available; in spite of the fact that I instruct the configure > command that it should enable vtk, and that I give it its proper include and > library directory locations, for some reason, configure comes back with the > following output: > > mpi.............................. : yes > nanoflann........................ : yes > nemesis.......................... : yes > version....................... : v5.22 > netcdf........................... : yes > version....................... : 4 > openmp........................... : no > parmetis......................... : yes > petsc............................ : yes > version....................... : 3.5.2 > pthreads......................... : yes > sfcurves......................... : yes > slepc............................ : yes > tbb.............................. : no > c++ threads...................... : no > c++ rtti ........................ : yes > tecio............................ : no > tecplot...(vendor binaries)...... : no > tetgen........................... : yes > triangle......................... : yes > trilinos......................... : no > vtk.............................. : no > > where you can see that vtk is finally not enabled. I saw in the mail list > that there was a problem with getting libmesh talking to version 6 of vtk, > and that is why I installed version 5. This is a secondary issue, but again, > any help would be much appreciated. > > Thanks in advance, > > Eduardo > > > Eduardo R. Hernández > Instituto de Ciencia de Materiales de Madrid (ICMM) > Consejo Superior de Investigaciones CientÃficas > Campus de Cantoblanco > 28049 Madrid > > tel.: +34 91 3348994 > email: eduardo.hernan...@csic.es > http://www.icmm.csic.es/ehernandez/Site/Home.html > > > > ------------------------------------------------------------------------------ > Want excitement? > Manually upgrade your production database. > When you want reliability, choose Perforce > Perforce version control. Predictably reliable. > http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk > _______________________________________________ > Libmesh-users mailing list > Libmesh-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/libmesh-users ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/libmesh-users
