The simple answer is that lilypond-book doesn't support pdflatex at the moment. It shouldn't be too difficult to add such a feature, since lilypond-bin can create output files that pdftex can process, the problem is that the pdftex output format is not very actively supported.
How come? I would think that for publishing Articles including music examples having a searchable PDF output using pdflatex would be the best way to do it. That way no detour using DVI is necessary.
However, it should be possible to search a file produced with dvips+ps2pdf just as well as a file produced by pdflatex.
or dvipdf...
Well, I tried all different versions you suggested, and with none of them I was able to search for any word. The example I sent you in the last mail was searchable, but my main thesis file wasn't. Here are the headers of the file - do you know what could stop Acrobat Reader from searching it?
\documentclass[titlepage,a4paper,12pt,twoside,bibtotoc,liststotoc,idxtotoc]{scrartcl}
% deutsches Dokument
\usepackage[german]{babel}% deutsche Besonderheiten
\usepackage{german}% Umlaute verarbeiten
\usepackage[latin1]{inputenc}
\usepackage[T1]{fontenc}% wie ist das Layout der Seiten
\pagestyle{headings}% A4-Seite besser ausnutzen
\usepackage{a4wide}% um underfull vboxes zu vermeiden \raggedbottom
% 1 1/2-zeilig
%\renewcommand{\baselinestretch}{1.5}% für die Verlinkungen im Dokument
% 1) für's Web
\usepackage[bookmarksnumbered,colorlinks,linkcolor=blue,anchorcolor=red,citecolor=blue,filecolor=magenta,menucolor=blue,pagecolor=blue,urlcolor=magenta]{hyperref}
% 2) für's print-out
%\usepackage[bookmarksnumbered,colorlinks,linkcolor=black,anchorcolor=black,citecolor=black,filecolor=black,menucolor=black,pagecolor=black,urlcolor=black]{hyperref}% PDF-Informationen
\hypersetup{pdftitle={Konzeption und Implementation eines computergestützten Systems zur Melodiesuche},
pdfauthor={Christian Datzko}}
% für einheitliche Schriftart im Koma-Paket
\renewcommand{\sectfont}{\rmfamily\bf}% für Bilder und Zeichnungen
\usepackage[dvips]{graphicx}
\graphicspath{{Abbildungen/}}% für wörtliches Einfügen von Dateien (z.B. .java-Dateien)
\usepackage{moreverb}% für bibtex-Bibliographien
\usepackage{natbib}
\bibliographystyle{Bibliography/bibliography}% für Mengensymbole
\usepackage{amssymb}
% für bessere Mathematik
\usepackage{amsmath}
% für Sätze, Theoreme und so
\usepackage{amsthm}
\theoremstyle{definition}
\newtheorem{theorem}{Theorem}[section]
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{proposition}[theorem]{Proposition}
\newtheorem{korollar}[theorem]{Korollar}
\newtheorem{satz}[theorem]{Satz}
\newtheorem{definition}[theorem]{Definition}
\def\proofname{Beweis}\newenvironment{beispiel}[1][Beispiel]{\begin{trivlist}
\item[\hskip \labelsep {\bfseries #1}]}{\end{trivlist}}
\newenvironment{anmerkung}[1][Anmerkung]{\begin{trivlist}
\item[\hskip \labelsep {\bfseries #1}]}{\end{trivlist}}\begin{document}
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