I managed to get rid of the "unterminated slur" message when slurring back to the beginning of a repeat with the following code, based on earlier suggestions on the list. Sharing FWIW, if anything.
\alternative { { a8 r r e16(
\afterGrace f16 {\once \override Rest #'transparent = ##t
g8\rest)} | }
{ a4 r |}
}
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