Compaq R3240, Ubuntu Edgy amd64

I started with Ubuntu Hoary, then Breezy, then Dapper, and now have
Edgy, all 64-bit. I have had a problem since the beginning making
backups to an external USB disk. Whether I use tar, dar or rsync the
computer will lock up somewhere in the middle of the backup. It will
also sometimes lock up when doing a lot of file deletions on the USB
disk, e.g., to delete an old backup set.

I have two different external hard disks, both 60 GB. One is a Datastor
Pocketec and the other is the original 60 GB hard disk that was in the
computer when I purchased it. I replaced the original disk with an 80
GB 7200 rpm disk, then bought a USB 2.0 enclosure for the old disk to
use it as an external. The lockups happen regardless of which disk I
use.

I usually just back up ~/, which has about 9.8 GB. The lockups seem to
happen most often when it is working on a large file. Sometimes only
the backup utility will lock up and I can kill it and continue to use
the computer. However, the other day something different happened that
made me wonder if the problem is with USB. I use a Logitech external
USB optical wireless mouse instead of the touchpad, and it has always
functioned flawlessly. I was using rsync to back up ~/ to the Pocketec
drive when rsync locked up. I killed it and continued working, but I
noticed that I was unable to umount the Pocketec drive. Fifteen minutes
later the Logitech mouse stopped working. In other words, something bad
happened to the USB bus.

So I rebooted, then did dmesg | less looking for references to USB. I
found the following:

[   13.243077] PCI: Bus #03 (-#06) is hidden behind  bridge #02 (-#02) (try 
'pci=assign-busses') [   13.243083] Please report the result to
linux-kernel to fix this permanently 
[   13.243142] PCI: Bus #07 (-#0a) is hidden behind  bridge #02 (-#02) (try 
'pci=assign-busses')
[   13.243149] Please report the result to linux-kernel to fix this permanently 
later [   13.378924] PCI: Using ACPI for IRQ routing
[   13.378930] PCI: If a device doesn't work, try "pci=routeirq".  If it helps, 
post a report later
[   18.119887] usbcore: registered new driver usbfs
[   18.119925] usbcore: registered new driver hub
later
[   18.465892] usb usb1: configuration #1 chosen from 1 choice
[   18.466107] hub 1-0:1.0: USB hub found
[   18.466126] hub 1-0:1.0: 3 ports detected
later
[   18.570786] usb usb2: configuration #1 chosen from 1 choice
[   18.571009] hub 2-0:1.0: USB hub found
[   18.571024] hub 2-0:1.0: 6 ports detected
later
[   19.006683] usb usb3: configuration #1 chosen from 1 choice
[   19.006725] hub 3-0:1.0: USB hub found
[   19.006740] hub 3-0:1.0: 3 ports detected
[   19.500499] usb 1-1: new low speed USB device using ohci_hcd and
address 2 later
[   19.715407] usb 1-1: configuration #1 chosen from 1 choice
[   19.733837] usbcore: registered new driver hiddev
[   19.743624] input: Logitech USB Receiver as /class/input/input1
[   19.743830] input: USB HID v1.10 Mouse [Logitech USB Receiver] on 
usb-0000:00:02.0-1 
[   19.743850] usbcore: registered new driver usbhid
[   19.743857] drivers/usb/input/hid-core.c: v2.6:USB HID core driver
later
[   42.278295] usbcore: registered new driver ndiswrapper

So it appears that there may be a problem with ACPI. I am wondering if
the USB driver uses an IRQ that is being shared with something else. I
haven't tried pci=assign-busses or pci=routeirq yet because I thought
I'd ask here first if anyone else has encountered similar problems.

Any suggestions welcome.
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