| Issue |
169846
|
| Summary |
Unable to install Julia Packages on Rorqual in HPC
|
| Labels |
new issue
|
| Assignees |
|
| Reporter |
xyliu96-l
|
I'm not able to install/compile the Julia packages on Rorqual in Julia @v.1.11.3
Here is the backtrace of building Plots.jl:
-------------------------------------------------------------------------------------------------------
(@v1.11) pkg> build Plots
Precompiling project...
Progress [> ] 0/207
◒ RangeArrays
◑ IndirectArrays
◓ PolygonOps
◐ CEnum
◐ OffsetArrays
◓ TableTraits
◓ TriplotBase
◑ InverseFunctions
◑ IterTools
◐ Observables
◑ EnumX
◑ AbstractTrees
◑ IntervalSets
◒ RoundingEmulator
◑ Extents
◑ AdaptivePredicates
terminate called after throwing an instance of 'std::system_error'
what(): Resource temporarily unavailable
terminate called after throwing an instance of 'PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
terminate called after throwing an instance of 'terminate called after throwing an instance of 'std::system_errorstd::system_error'
std::system_error'
terminate called after throwing an instance of ''
what(): what(): std::system_errorResource temporarily unavailable'
Resource temporarily unavailable
what():
Resource temporarily unavailable what(): Resource temporarily unavailable
PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
Stack dump:
0. PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
Program arguments: /cvmPLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
fsPLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/julia/1.11.3/libexec/julia/lld -flavor gnu -shared -o /home/xyliu96/.julia/compiled/v1.11/TableTraits/jl_lW3wGU --whole-archive /home/xyliu96/.julia/compiled/v1.11/TableTraits/jl_0tpVO7 --no-whole-archive -L/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/julia/1.11.3/lib/julia -L/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/julia/1.11.3/lib -ljulia -ljulia-internal
terminate called recursively
Stack dump without symbol names (ensure you have llvm-symbolizer in your PATH or set the environment var `LLVM_SYMBOLIZER_PATH` to point to it):
Stack dump without symbol names (ensure you have llvm-symbolizer in your PATH or set the environment var `LLVM_SYMBOLIZER_PATH` to point to it):
Stack dump without symbol names (ensure you have llvm-symbolizer in your PATH or set the environment var `LLVM_SYMBOLIZER_PATH` to point to it):
Stack dump without symbol names (ensure you have llvm-symbolizer in your PATH or set the environment var `LLVM_SYMBOLIZER_PATH` to point to it):
terminate called recursively
terminate called recursively
terminate called after throwing an instance of 'std::system_error'
what(): Resource temporarily unavailable
PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
Stack dump:
0. Program arguments: /cvmfs0 /so libLLVM-16jl.sof 0x00007f3f11c44d38t .computecanllvm::sys::PrintStackTrace(llvm::raw_ostream&, int)a + 40d
a.ca/easybuild/software/2023/x86-64-v3/Core/julia/1.11.3/libexec/julia/lld -flavor gnu -shared -o /home/xyliu96/.julia/com1 p libLLVM-16jl.soi 0x00007f3f11c4285cl
ed/v1.11/2 C libc.so.6 E 0x00007f3f10c63790n
um/jl_zs3 q libc.so.6 Sterminate called recursively
0x00007f3f10cb17acJ
X --whole-archive /home/xyliu96/.julia/compiled/v1.11/CEnum/jl_q85wgV --no-whole-archive -L/cvmfs/soft.computecanada.ca/easybuild/software/20230 /x libLLVM-16jl.so8 0x00007f0d6e644d386 -64-llvm::sys::PrintStackTrace(llvm::raw_ostream&, int)v + 403
/Core/julia/1.11.3/lib/julia -L/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/julia/1.11.3/lib -ljulia1 libLLVM-16jl.so- 0x00007f0d6e64285cl
julia-2 i libc.so.6 n 0x00007f0d6d663790t
ernal
3 libc.so.6 0x00007f0d6d6b17ac
4 libc.so.6 0x00007f0d6d6636f2 gsignal + 18
5 libc.so.6 0x00007f0d6d64d4b2 abort + 211
6 libstdc++.so.6 0x00007f0d6d8a89bb
7 libstdc++.so.6 0x00007f0d6d8b836a
8 libstdc++.so.6 0x00007f0d6d8b83d5
9 libstdc++.so.6 0x00007f0d6d8b8627
10 libstdc++.so.6 0x00007f0d6d8ab627Stack dump without symbol names (ensure you have llvm-symbolizer in your PATH or set the environment var `LLVM_SYMBOLIZER_PATH` to point to it):
std::__throw_system_error(int) + 131
11 libstdc++.so.6 0x00007f0d6d8e4eb5
12 libLLVM-16jl.so 0x00007f0d6e59ad82
13 libLLVM-16jl.so 0x00007f0d6e592efa llvm::ManagedStaticBase::RegisterManagedStatic(void* (*)(), void (*)(void*)) const + 90
14 libLLVM-16jl.so 0x00007f0d6e599b1a
15 libLLVM-16jl.so 0x00007f0d6e59a88d llvm::parallelFor(unsigned long, unsigned long, llvm::function_ref<void (unsigned long)>) + 429
16 lld 0x000000000056f1b3 lld::elf::LinkerDriver::link(llvm::opt::InputArgList&) + 2915
17 lld 0x000000000057276a lld::elf::LinkerDriver::linkerMain(llvm::ArrayRef<char const*>) + 4906
18 lld 0x0000000000573deb lld::elf::link(llvm::ArrayRef<char const*>, llvm::raw_ostream&, llvm::raw_ostream&, bool, bool) + 4363
19 lld 0x0000000000473b2d
20 lld 0x0000000000473ed6 lld_main(int, char**) + 406
21 libc.so.6 0x00007f0d6d64e94a
22 libc.so.6 0x00007f0d6d64ea05 __libc_start_main + 133
23 lld 0x0000000000471d53
0 libLLVM-16jl.so 0x00007f8494244d38 llvm::sys::PrintStackTrace(llvm::raw_ostream&, int) + 40
1 libLLVM-16jl.so 0x00007f849424285c
2 libc.so.6 0x00007f8493263790
3 libc.so.6 0x00007f84932b17ac
4 libc.so.6 0x00007f84932636f2 gsignal + 18
5 libc.so.6 0x00007f849324d4b2 abort + 211
6 libstdc++.so.6 0x00007f84934a89bb
lld: error: /home/xyliu96/.julia/compiled/v1.11/OffsetArrays/jl_wpIEaK(text#0.o): not an ELF file
◓ RangeArrays
◐ IndirectArrays
◒ PolygonOps
◑ CEnum
◑ OffsetArrays
◒ TableTraits
◒ TriplotBase
◐ InverseFunctions
◐ IterTools
◑ Observables
◐ EnumX
◐ AbstractTrees
◐ IntervalSets
◓ RoundingEmulator
◐ Extents
◐ AdaptivePredicates
----------------------------------------------------------------------------------------
I would appreciate any advice on resolving this, thanks in advance!
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