If in the MWE I drop the equation, and don't specify the math font (below), still get the error, which seems to point to fontspec as the culprit. Still get the following error:

luaotfload | Font names database loaded: C:/Users/egc/AppData/Local/MiKTeX/2.9/ luatex-cache/generic/names/otfl-names.lua(load: C:/Users/egc/AppData/Local/MiKT
eX/2.9/luatex-cache/generic/fonts/otf/temp-xits-regular.lua)
! LuaTeX error ...les (x86)/MiKTeX 2.9/tex/latex/fontspec/fontspec.lua:45: atte
mpt to call upvalue 'check_script' (a nil value)
stack traceback:
...les (x86)/MiKTeX 2.9/tex/latex/fontspec/fontspec.lua:45: in function 'check
_ot_script'
 <\directlua >:1: in main chunk.
\fontspec_check_script:nTF ...ontspec_font","#1")}
\if@tempswa \prg_return_tr...
l.4 \setmainfont{XITS}

?

Process has been terminated ...




\documentclass[11pt,letterpaper]{article}

\usepackage{fontspec}
\setmainfont{XITS}
%\usepackage{unicode-math}
  % \setmathfont{XITS Math}

\begin{document}

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent in tincidunt nulla. Donec quis laoreet est. Aenean vitae est felis, a venenatis magna. Mauris semper bibendum vulputate. Etiam bibendum quam ut erat rutrum consequat.

%\begin{equation}
%\frac{dN}{dt}=rN\left(1-\frac{N}{K}\right)
%\end{equation}

\end{document}





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