On Wed, 2011-05-04 at 16:47 -0400, Christopher Walker wrote:
> Hello,
>
> We have a user who is trying to post-process HDF files in R. Her script
> goes through a number (~2500) of files in a directory, opening and
> reading the contents. This usually goes fine, but occasionally the
> script dies with:
> open("/n/scratch2/moorcroft_lab/nlevine/Moore_sites_final/met/LT_spinup/ms67/analy/s67-E-1628-04-00-000000-g01.h5",
>
> O_RDONLY) = 3
> fstat(3, {st_mode=S_IFREG|0644, st_size=0, ...}) = 0
This thinks it is a zero length file, but I'll bet you see the right
length later.
Perhaps you could test Johann's suggestion from
http://jira.whamcloud.com/browse/LU-274 to see it that helps, and report
the results in Jira?
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