How can I correctly tell Lynx (on the command line) to fill in the form in
the attached document (fastasite.html at http://www2.ebi.ac.uk/fasta3),
post it, and dump the result of the interaction with the remote host to a
local file?
Thanks for your help,
Vieri Di Paola
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="KEYWORDS" content="FASTA3, DATABASE, SEARCHES">
<meta name="Author" content="Rodrigo Lopez">
<title>Fasta3</title>
<style type="text/css">
<!--
body { background: white;
font-family: Arial,Helvetica,Univers,Zurich BT
font-size: 10pt
}
td { background: white;
font-family: Arial,Helvetica,Univers,Zurich BT
font-size: 10pt
}
h1 { background: white;
font-family: Arial,Helvetica,Univers,Zurich BT }
h2 { background: white;
font-family: Arial,Helvetica,Univers,Zurich BT }
h3 { background: white;
font-family: Arial,Helvetica,Univers,Zurich BT }
-->
</style>
</head>
<body bgcolor="#FFFFFF" text="#000000" link="#009933"
vlink="#FF0000" topmargin="0" leftmargin="0"
onunload="closeNotify()" marginwidth="0" marginheight="0"
onload="checkBrowser()">
<center>
<table border="0">
<tr>
<td> </td>
<td><img src="../ebibanner.gif" alt="EBI Banner" width="627"
height="77" id="Picture12"></td>
</tr>
<tr>
<td> </td>
<td><table border="0">
<tr>
<td><h2><font color="#009933">Fasta3</font></h2></td>
<td><a href="/fasta3/help.html">
<img src="../Help_EBIButtonOff.gif"
alt="Help_EBIButtonOff" border="0" width="85"
height="29" id="Picture15"></a>
</td>
<td><a href="http://www2.ebi.ac.uk/">
<img src="../Tools_EBIButtonOff_1_.gif" border="0"
width="85" height="29" id="Picture25"></a>
</td>
<td><a href="http://www.ebi.ac.uk">
<img src="../EBI_Home_EBIButtonOff.gif"
alt="Home_ebibutton3" border="0" width="85"
height="29" id="Picture13"></a>
</td>
</tr>
</table>
</td>
</tr>
<tr><td></td><td>
<!--form goes here -->
<FORM NAME="fasta3" ENCTYPE="multipart/form-data"
ACTION="http://www2.ebi.ac.uk/cgi-bin/newfasta3.pl" METHOD=POST>
<table border="1" cellpadding="1">
<tr>
<td align=center><a href="/fasta3/help.html#email"><font
FACE="Arial,Helvetica,Univers,Zurich BT" color=red><b>YOUR
EMAIL</b></font></a></b></font></td>
<td align=center><a href="/fasta3/help.html#title">SEARCH TITLE</a></td>
<td align=center><a href="/fasta3/help.html#results">RESULTS</a></td>
<td align=center><a href="/fasta3/help.html#strand">DNA STRAND</a></td>
<td align=center><a href="/fasta3/help.html#matrix">MATRIX</a></td>
</tr>
<tr>
<td align=center><input type="text" NAME="email" size=15 VALUE=""></td>
<td align=center><input type="text" NAME="title" size=15 VALUE="Sequence"></td>
<td align=center><select name="srchtype">
<option selected> interactive
<option> email
</select>
</td>
<td align=center><select name="strand">
<option selected> none
<option> none
</select>
</td>
<td align=center><select name="matrix">
<OPTION selected> blosum50
<option>blosum62
<option> pam250
<option> blosum40 <option> blosum45 <option> blosum62<option> blosum65 <option>
blosum70
<option> blosum75 <option> blosum80 <option> blosum85 <option> blosum90
<option> blosum100 <option> GONNET <option> md_20 <option> md_40 <option> pam10
<option> pam20 <option> pam30 <option> pam40
<option> pam50 <option> pam60 <option> pam70 <option> pam80 <option> pam90 <option>
pam100
<option> pam110 <option> pam120 <option> pam130 <option> pam140 <option> pam150
<option> pam160 <option> pam170 <option> pam180 <option> pam190 <option> pam200
<option> pam210
<option> pam220 <option> pam230 <option> pam240 <option> pam250 <option> pam260
<option> pam270
<option> pam280 <option> pam290 <option> pam300 <option> pam310 <option> pam320
<option> pam330
<option> pam340 <option> pam350 <option> pam360 <option> pam370 <option> pam380
<option> pam390
<option> pam400 <option> pam410 <option> pam420 <option> pam430 <option> pam440
<option> pam450
<option> pam460 <option> pam470 <option> pam480 <option> pam490 <option>
pam500</select>
</td>
</tr>
<tr><td align=center><a href="/fasta3/help.html#gaps">GAP PENALTIES</a></td>
<td align=center><a href="/fasta3/help.html#scores">SCORES & ALIGNMENTS</a></td>
<td align=center ><a href="/fasta3/help.html#ktup">KTUP</a>/<a
href="/fasta3/help.html#histogram">HISTOGRAM</a></td>
<td align=center><a href="/fasta3/help.html#program">PROGRAM</a></td>
<td align=center><a href="/fasta3/help.html#database">DATABASES</a></td>
</tr>
<tr>
<td align=center>
<table>
<tr><td align="right">OPEN<select name="gapopen">
<option selected> -12
<option> -18
<option> -16
<option> -14
<option> -10
<option> -8
<option> -6
<option> -4
<option> -2
<option> 0
</select></td>
</tr>
<tr><td align="right">RESIDUE<select name="gapext">
<option selected> -2
<option> 0
<option> -4
<option> -6
<option> -8
</select>
</td>
</tr>
</table>
</td>
<td>
<table>
<tr><td align="right">SCORES<select name="scores">
<option> 10
<option> 20
<option> 30
<option> 40
<option selected> 50
<option> 60
<option> 70
<option> 80
<option> 90
<option> 100
</select>
</td></tr>
<tr><td align="right">ALIGNMENTS<select name="alignments">
<option> 10
<option> 20
<option> 30
<option> 40
<option selected> 50
<option> 60
<option> 70
<option> 80
<option> 90
<option> 100
</select>
</td>
</tr>
</table>
</td>
<td>
<table>
<tr><td align="right">KTUP<select name="ktup">
<option selected> 2
<option> 1
</select>
</td></tr>
<tr><td align="right">HIST<select name="hist">
<option selected> no
<option> yes
</select>
</td></tr>
</table>
</td>
<td align=center>
<select name="program" size="5" cols="8">
<option selected> fasta3
<option> fastx3
<option> fasty3
<option> fastf3
<option> fasts3
</select>
</td>
<td align=center>
<select name="dbtype" size="1" onChange="redirect(this.options.selectedIndex)">
<option selected>Protein</option>
<option>Nucleic Acid</option>
</select>
<br>
<select name="database" MULTIPLE SIZE="4" cols="12">
<option selected value="swall"> swall
<option value="swissprot"> swiss-prot
<option value="swnew"> swiss-new
<option value="trembl"> trembl
<option value="sptrembl"> sptrembl
<option value="prints"> prints
<option value="pdb"> pdb
<option value="HLAp"> HLAprot
</select>
</td>
</tr>
</table>
<center>
<a href="/fasta3/help.html#sequence">Enter or Paste</a> a <a
href="/fasta3/help.html#wsequence">Sequence</a> in any format:<br> <TEXTAREA
NAME="sequence" ROWS=10 COLS=65 VALUE=""></TEXTAREA>
<br>
<b><a href="/fasta3/help.html#upload">Upload</a> a file</b>:<input type="file"
name="upfile"><p>
<INPUT TYPE="submit" VALUE="Run Fasta3" onClick="openNotify()"> <INPUT TYPE="reset"
VALUE="RESET FORM"><P>
</form>
<!--form ends here-->
</td><p>
</tr>
</table>
</center>
</body>
<script language = "JavaScript" src="http://www2.ebi.ac.uk/fasta3/newfasta3db.js">
</script>
</html>
