> was the change from "math-insert
> \choose" to "math-insert \binom" intentional? And if so, why?

This is intended because LyX 1.6.0 will have \tbinom and \dbinom. So it will be confusing that the standard binom command is \choose. \choose is identic to \binom.
OK I'll postpone this change to LyX 1.6.0.

regards Uwe

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