Thanks everyone for the feedback.

I'm using Mercurial, and unfortunately the eol support is rather screwy.

It's easy to make a case either way: that LyX should produce
consistent output, or that LyX is not responsible for line endings.
I'm having problems because of inconsistency, which I feel is at least
partially LyX's fault.  I agree with Abdel's points--I'd personally be
delighted with mandatory LF output.  Notepad already fails so often
due to LFs that few consider it a viable tool for file editing.

A thread on StackOverflow recommends effectively replacing
  output.WriteLine(foo);
with
  output.Write(foo);
  output.Write(LineTerminator);

Of course I defer to the experts on whether LyX should take control of
eols, but I have my hopes.  :)

-Ben

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