Hi

I do not use jabref, however in bibtex you may use strings{} for this. 
The best way is to use a shorthand form of the journal when you
enter the citataion (like AJP) and then make a new bibfile
with:
@string{AJP = "Am. J. Physiol."}
and call that bibfile before your bibfile with citations.
in LaTeX: \bibliography{abbreviations,citations}

You may make several @strings to format into 
"Am. J. Physiol." if your citation.bib
has many different formats for each journal.

Ingar

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