LyX users might like to get LyX output directly from Multimarkdown. Thus you can draft your documents using Multimarkdown or even Scrivener to create Multimarkdown and then polish the results in LyX. I have worked with Fletcher Penny to implement that capability.

Here is a link to the announcement page: http://fletcherpenney.net/2014/01/mmd_4.5_released

And here is a link to a page with documentation specific to the LyX capability: http://crcowan.github.io/MultiMarkdown-4-LyX-Maintenance/

Let me know what you think and if you find problems please post to the Multimarkdown Issues page: https://github.com/fletcher/MultiMarkdown-4/issues

Enjoy!

  Charles

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