Dear users, I have strange error when trying to execute my MPI application build using mpicxx by OpenMPI. Use MacOS 10.7.5. Before I had openmpi and mpich together, so I tried deleting both, installing openmpi from scratch several times. Doesn't help. The following mpi-related application are installed:
$ port installed | grep mpi mpi-doc @3.0.4_0 mpi-doc @3.1.1_0 (active) mpi_select @0.0_2 (active) openmpi-clang @1.7.5_1+gcc48 (active) openmpi-default @1.7.5_1+gcc48 (active) The information about used compiler: $ mpicxx -v Using built-in specs. COLLECT_GCC=/opt/local/bin/g++ COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.7.3/lto-wrapper Target: x86_64-apple-darwin11 Configured with: /opt/local/var/macports/build/_opt_mports_dports_lang_gcc47/gcc47/work/gcc-4.7.3/configure --prefix=/opt/local --build=x86_64-apple-darwin11 --enable-languages=c,c++,objc,obj-c++,lto,fortran,java --libdir=/opt/local/lib/gcc47 --includedir=/opt/local/include/gcc47 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-4.7 --with-libiconv-prefix=/opt/local --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-4.7 --with-gxx-include-dir=/opt/local/include/gcc47/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-ppl=/opt/local --with-cloog=/opt/local --enable-cloog-backend=isl --disable-cloog-version-check --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-ppl-version-check --with-pkgversion=' MacPorts gcc47 4.7.3_5' Thread model: posix gcc version 4.7.3 (MacPorts gcc47 4.7.3_5) The error message when calling mpiexec -np 1 myapplicatio is the following: Failed to parse XML input with the minimalistic parser. If it was not generated by hwloc, try enabling full XML support with libxml2. [Kirills-MacBook-Pro-2.local:78805] [[57778,1],0] ORTE_ERROR_LOG: Error in file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openmpi/openmpi-clang/work/openmpi-1.7.5/orte/util/nidmap.c at line 106 [Kirills-MacBook-Pro-2.local:78805] [[57778,1],0] ORTE_ERROR_LOG: Error in file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openmpi/openmpi-clang/work/openmpi-1.7.5/orte/mca/ess/env/ess_env_module.c at line 154 -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_util_nidmap_init failed --> Returned value Error (-1) instead of ORTE_SUCCESS -------------------------------------------------------------------------- -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_ess_init failed --> Returned value Error (-1) instead of ORTE_SUCCESS -------------------------------------------------------------------------- -------------------------------------------------------------------------- It looks like MPI_INIT failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during MPI_INIT; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): ompi_mpi_init: ompi_rte_init failed --> Returned "Error" (-1) instead of "Success" (0) -------------------------------------------------------------------------- *** An error occurred in MPI_Init *** on a NULL communicator *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, *** and potentially your MPI job) [Kirills-MacBook-Pro-2.local:78805] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed! ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[57778,1],0] Exit code: 1 -------------------------------------------------------------------------- Best regards, Kirill _______________________________________________ macports-users mailing list [email protected] https://lists.macosforge.org/mailman/listinfo/macports-users
