I'm setting up a new MDB instance,

        mysqld -V
                mysqld  Ver 10.4.7-MariaDB-log for Linux on x86_64 (Source 
distribution)

I've configured my charsets/collations according to:

  
https://mariadb.com/kb/en/library/setting-character-sets-and-collations/#example-changing-the-default-character-set-to-utf-8

my config includes

        cat /usr/local/etc/mariadb/my.cnf

                [client]
                default-character-set = utf8mb4
                ...

                [mysqld]
                init-connect          = 'SET NAMES utf8mb4'
                collation-server      = utf8mb4_unicode_ci
                character-set-server  = utf8mb4
                ...

                [mysql]
                default-character-set = utf8mb4
                ...

MDB was built with

        ... -DDEFAULT_CHARSET=utf8mb4 -DDEFAULT_COLLATION=utf8mb4_unicode_ci 
-DWITH_EXTRA_CHARSETS=all ...

I initialize data with:

  /opt/mariadb/scripts/mysql_install_db --user=mysql --datadir=/data/db/mariadb 
--defaults-file=/usr/local/etc/mariadb/my.cnf

No error during initialization, & subsequently MDB starts as expected.

But if I next exec `mysql_upgrade`, it FAILS with

        Phase 1/7: Checking and upgrading mysql database
        Processing databases
        mysql
        mysql.column_stats                                 OK
        mysql.columns_priv                                 OK
        mysql.db                                           OK
        mysql.event                                        OK
        mysql.func                                         OK
        mysql.global_priv                                  OK
        mysql.gtid_slave_pos                               OK
        mysql.help_category                                OK
        mysql.help_keyword                                 OK
        mysql.help_relation                                OK
        mysql.help_topic                                   OK
        mysql.index_stats                                  OK
        mysql.innodb_index_stats                           OK
        mysql.innodb_table_stats                           OK
        mysql.plugin                                       OK
        mysql.proc                                         OK
        mysql.procs_priv                                   OK
        mysql.proxies_priv                                 OK
        mysql.roles_mapping                                OK
        mysql.servers                                      OK
        mysql.table_stats                                  OK
        mysql.tables_priv                                  OK
        mysql.time_zone                                    OK
        mysql.time_zone_leap_second                        OK
        mysql.time_zone_name                               OK
        mysql.time_zone_transition                         OK
        mysql.time_zone_transition_type                    OK
        mysql.transaction_registry                         OK
        Phase 2/7: Installing used storage engines... Skipped
        Phase 3/7: Fixing views
        mysql.user                                         OK
        Phase 4/7: Running 'mysql_fix_privilege_tables'
        ERROR 1267 (HY000) at line 7: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 59: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 168: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 179: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 195: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 322: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 393: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 400: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        ERROR 1267 (HY000) at line 407: Illegal mix of collations 
(utf8mb4_unicode_ci,COERCIBLE) and (utf8mb4_general_ci,COERCIBLE) for operation 
'like'
        FATAL ERROR: Upgrade failed


checking what's installed

        mysqlshow
                +--------------------+
                |     Databases      |
                +--------------------+
                | information_schema |
                | mysql              |
                | performance_schema |
                | test               |
                +--------------------+

and the charset/collation

        mysql

                SHOW CREATE DATABASE information_schema;
                SHOW CREATE DATABASE mysql;
                SHOW CREATE DATABASE performance_schema;
                SHOW CREATE DATABASE test;

                        | information_schema | CREATE DATABASE 
`information_schema` /*!40100 DEFAULT CHARACTER SET utf8 */ |
                        | mysql              | CREATE DATABASE `mysql` /*!40100 
DEFAULT CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci */
                        | performance_schema | CREATE DATABASE 
`performance_schema` /*!40100 DEFAULT CHARACTER SET utf8 */ |
                        | test               | CREATE DATABASE `test` /*!40100 
DEFAULT CHARACTER SET latin1 */ |


looks to be a mix ... and the source of the errors.

What config etc. needs to be changed to avoid the upgrade errors, and get 
charsets/collations correctly set up at data initialization -- as spec'd in 
my.cnf?


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