Hi
using the getGene function with hsapiens return result but now that i'm
using the mmusculus specie it doesn't work
for example with a mmusculus refseq :
martMm <- useMart(biomart = "ensembl", dataset="mmusculus_gene_ensembl")
getGene(id = "NM_019695", type = "refseq", mart = martMm)
Error in getBM(attributes = c(att, "hgnc_symbol", "description", chrname, :
attribute: hgnc_symbol not found, please use the function
'listAttributes' to get valid attribute names
whereas with a hsapiens refseq it gives result and no error message:
martHs <- useMart(biomart = "ensembl", dataset="hsapiens_gene_ensembl")
getGene(id = "NM_000015", type = "refseq", mart = martHs)
Can anyone tell me what I'm doing wrong? is this function just for homo
sapiens ?
Thanks
Tabaré Mourot
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MOUROT Tabaré
Stagiaire Master Pro BioInfo
Plateforme transcriptome
Institut de Génomique Fonctionnelle
141, rue de la Cardonille
34094 Montpellier Cedex 5
Tel : +33 (0)4 67 14 29 64
E-mail : [EMAIL PROTECTED]
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