Hi,
I am probably missing something obvious but I went trough all availabe
user docs for the versions 0.2,0.3 and 0.4 and could not find it :-(
1) how can you configure a DataSet so that a user can choose between
different Attribute pages ? Guess, you need to define somewhere what is
the type of the attributes: 'attribute' or 'sequence'. In the perl
martview package it seems that the Basically I am trying to find out
how one must handle fasta sequence data: where should it be stored, how
can you configure, how can you dump it ?
2) in order to have a look at the configuration of a real example, I
tried to import the DatasetConfig of some ensembl datasets but failed.
Connecting seems not to be the problem (got the settings from a
defaultMartRegistry.xml:
<RegistryDBPointer
databaseType = "mysql"
host = "martdb.ebi.ac.uk"
port = "3306"
database = "central_registry"
schema = "central_registry"
user = "anonymous"
password = ""
/>
But as soon as I try to import the configuration I get the message:
"No datasets available for import - is this a BioMart compatible schema
? Absent or empty meta_configuration table"
I tried both martj 0.3 and 0.4.
Regards,
Marc
