On 8 Jun 2006, at 13:04, Pallavi Sarmah wrote:
Hi
I m using j2sdk-1_4_2_10, and ve set the path accordingly, bt still I
get the Exceptions... and I cant see the dataset.
When I run the command bin/martexplorer.sh I get a window which looks
like fig 2.2.2 in the user-docs, after that I cannot go further...
Hi Pallavi,
this still seems to be some sort of weird environment problem.
try to dowload
ftp -a
ftp.ebi.ac.uk:pub/software/biomart/martj_current/martj-bin-jre-
linux.tgz .
(if you run on linux)
or
ftp -a
ftp.ebi.ac.uk:pub/software/biomart/martj_current/martj-bin-jre-
windows.zip .
(if you are on windows)
they come with their own jre
see if this fixes the problem
a.
Regards,
Pallavi
-----Original Message-----
From: Syed Haider [mailto:[EMAIL PROTECTED]
Sent: Thursday, June 08, 2006 2:18 PM
To: Arek Kasprzyk; Pallavi Sarmah; [email protected]
Subject: Re: [mart-admin] Fwd: [mart-dev] cannot connect to local
database
Dear Pallavi
I assume that you get the exceptions, and keep getting them as you
click
anywhere on the martExplorer interface-right. try getting Java by Sun,
and set the $path accordingly.
e.g if your java lives in usr/local/java/bin, you can use the following
from terminal,
set path=(/usr/local/java/bin $path)
rehash
and hopefully, that would work.
Cheers
Syed
Begin forwarded message:
From: "Pallavi Sarmah" <[EMAIL PROTECTED]>
Date: 8 June 2006 07:59:54 BST
To: "Arek Kasprzyk" <[EMAIL PROTECTED]>
Subject: RE: [mart-dev] cannot connect to local database.
Hi
I get the following error message
Exception in thread "Thread-7" java.lang.NullPointerException
at
javax.swing.plaf.basic.BasicPopupMenuUI$PopMenuHandler.popupMenuWillBec
o
meVisible (libgcj.so.7)
at javax.swing.JPopupMenu.firePopupMenuWillBecomeVisible
(libgcj.so.7)
at javax.swing.JPopupMenu.setVisible (libgcj.so.7)
at org.ensemble.mart.explorer.PopUptreeCombo$2.run
(PopUpTreeCombo.java:125)
(everytime the Thread # changes)
And if I click on the explorer I get lots of event exception
(Exception
during event dispatch:)
Regards,
Pallavi
-----Original Message-----
From: Arek Kasprzyk [mailto:[EMAIL PROTECTED]
Sent: Wednesday, June 07, 2006 4:41 PM
To: Pallavi Sarmah
Subject: Re: [mart-dev] cannot connect to local database.
On 7 Jun 2006, at 10:00, Pallavi Sarmah wrote:
Hi
Thank you so much.
Now I am being able to connect to the database, bt nt being able to
see
the datasets and query.
Regards,
Pallavi
can you tell me what comes out in the terminal when you run it?
any error messages? How about logs/error.log?
-----------------------------------------------------------------------
-
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
-----------------------------------------------------------------------
-
-------
-----------------------------------------------------------------------
-
-------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
-----------------------------------------------------------------------
-
-------
------------------------------------------------------------------------
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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