Hi there,
I'm working on a mart and all was well but something happened (not
sure what I did) and now I'm having trouble exporting from the mart.
Filtering works fine but when I come to export the final results I
get an error on screen and this error listed in the server error_log:
-------------------- EXCEPTION --------------------
DATE: 2-AUG-2006
MSG: Tried to add nonexistent attribute to query
STACK BioMart::Query::addAttribute /project/biomart/biomart-web/
biomart-plib/BioMart/Query.pm:691
STACK martview::initialise_results /project/biomart/biomart-web/perl/
multi/martview:3433
STACK martview::print_results /project/biomart/biomart-web/perl/multi/
martview:2853
STACK Apache::ROOT::perl::biomart::martview::handler /project/biomart/
biomart-web/perl/multi/martview:185
STACK (eval) /usr/local/lib/perl5/site_perl/5.8.7/sun4-solaris/Apache/
Registry.pm:149
STACK Apache::Registry::handler /usr/local/lib/perl5/site_perl/5.8.7/
sun4-solaris/Apache/Registry.pm:149
STACK (eval) /dev/null:0
STACK toplevel /dev/null:0
-------------------------------------------
[Wed Aug 2 11:01:09 2006] [error] at /project/biomart/biomart-web/
perl/multi/martview line 3433\n
I've checked all the attributes in marteditor and they look OK, Ive
use the validate menu option in mart editor and I dont get any errors
(this opens up a new marteditor window with a few new attributes that
its noticed that I havent added but I dont get any error messages).
I've exported the (presumably) validated configuration back to the
mart and restarted the server and still get the same error. All my
other marts work fine so somehow this one configuration is having
trouble.
Anyone suggest how I might find out more about what is going wrong so
I can fix it - what nonexistent attribute its trying to add, etc.?
Cheers,
Simon.
--
Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw
