On 29 Sep 2006, at 18:16, Twigger Simon wrote:
Hi there,
We're moving a mart over to oracle and we've got a main table called:
RGD_GENES__GENES__MAIN
When I try and do the naive setup it cant find a dataset and asks if
this is a biomart compatible schema... The schema used to work fine on
MySQL, I wondering if the case change from rgd_genes__genes__main is
causing the problem? Do Biomart table and attribute names have to be
lowercase, or at least the parts that biomart is relying on (__main,
__dm for tables, _key, etc for attributes)
Thanks in advance for any thoughts on this.
Simon,
could you describe your table for us?
Also for MEditor to work you need to have at least one entry in this
table.
Could you check that?
a.
Simon.
--
Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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