> > On 21 Dec 2006, at 16:41, [EMAIL PROTECTED] wrote: > >> Hi Arek, >> >> I'm afriad that I'm still having the same problems with displaying >> dataset and database names. I have reinstalled 0.5 with no effect and >> I always now use --clean and even delete the caches (registry, >> template and XML). Sifting through the code it looks as though the >> first time Apache begins that it creates and compiles the >> datasetpanel html into /conf/templates/cache/ using the the template >> in /conf/default/. To do this it calls process_template() in Web.pm, >> and then calls the Template module to transform the template into >> html. >> >> The parameters are passed correctly to Template as far as I can tell, >> but the resulting html does not include the schema and dataset names >> passed in. (hence no options in the drop down). I'm not really familar >> with the Template-Toolkit, although I've re-installed 2.15 with no >> effect. Is there any reason why it can't access the hash passed in to >> create the panel html? Does Template require any special >> configuration? I don't know if this is having an effect but I'm also >> running Apache not as root but nobody, as instructed in documentation. >>
Hi Robert, Once you load the page, you donot see any items in drop down menus - CORRECT ? Assuming thats the case, could you simply save the HTML of the page (view source code of the page from browser), and post it. Hope you are aware of the restriction of attachments on mart-dev :). Cheers Syed > > Hi Robert, > I must admit I don't really have an idea what's going wrong there but > let's wait for the comments from people > who know the Template Toolkit better > > a. > > >> Help! >> >> Robert >> >> >> > >> > Hi Arek, >> > >> > I have posted a message on mart-dev but it's taking a while to get >> > through. I didn't realise this first message was sent! The registry >> > file is >> > below: >> > >> > >> >> Hi Robert, >> your registry looks perfectly fine. I did test it my own install here >> with your registry file (after removing proxy settings) and it shows >> all the display names correctly and queries fine >> >> are you using the latest code from 'release-0_5' branch? >> >> can you reconfigure your server with a '--clean' switch >> or even better throw away all the code and get the latest >> and try again >> >> a,. >> >> >> >> > <?xml version="1.0" encoding="UTF-8"?> >> > <!DOCTYPE MartRegistry> >> > <MartRegistry> >> > <virtualSchema name="default" default="1"> >> > >> > <MartURLLocation >> > name = "msd" >> > displayName = "My BioMart Database" >> > host = "www.biomart.org" >> > port = "80" >> > proxy = >> > "http://chproxy.eu.unilever.com:8080"; >> > visible = "1" >> > default = "" >> > includeDatasets = "msd" >> > martUser = "" >> > /> >> > >> > >> > <MartURLLocation >> > name = "uniprot" >> > displayName = "My Uniprot Database" >> > host = "www.biomart.org" >> > port = "80" >> > proxy = >> > "http://chproxy.eu.unilever.com:8080"; >> > visible = "1" >> > default = "1" >> > includeDatasets = "uniprot" >> > martUser = "" >> > /> >> > >> > >> > </virtualSchema> >> > </MartRegistry> >> > >> >> >> ----------------------------------------------------------------------- >> - >> ------- >> Arek Kasprzyk >> EMBL-European Bioinformatics Institute. >> Wellcome Trust Genome Campus, Hinxton, >> Cambridge CB10 1SD, UK. >> Tel: +44-(0)1223-494606 >> Fax: +44-(0)1223-494468 >> ----------------------------------------------------------------------- >> - >> ------- >> >> >> >> > > > ------------------------------------------------------------------------ > ------- > Arek Kasprzyk > EMBL-European Bioinformatics Institute. > Wellcome Trust Genome Campus, Hinxton, > Cambridge CB10 1SD, UK. > Tel: +44-(0)1223-494606 > Fax: +44-(0)1223-494468 > ------------------------------------------------------------------------ > ------- > > > ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
