On 5 Jan 2007, at 14:01, Camargo R D S wrote:
Dear Arek,
I can start biomart now, that's great!
However I am getting the following error message:
YOUR SITE HEADER HERE
ERROR: caught BioMart::Exception: non-BioMart die(): Permission denied
at /home/renata/BioMart/biomart-perl/lib/BioMart/Web.pm line 2052.
can you double check that you have all the write permission for
everything
under biomart-perl/conf?
It this does not work, try to get rid off the code do a clean checkout
and configure it again
a.
If you repeatedly get directed to this error page, there may be a
problem with
your current session parameters. To clear your session and start with
a clean
slate, please click the button below.
Stacktrace:
Exception::Class::Base::new
/home/renata/BioMart/biomart-perl/cgi-bin/martview:78
ModPerl::ROOT::ModPerl::Registry::
home_renata_BioMart_biomart_2dperl_cgi_2dbin_martview::handler
/usr/local/lib/perl/5.8.8/ModPerl/RegistryCooker.pm:203
(eval) /usr/local/lib/perl/5.8.8/ModPerl/RegistryCooker.pm:203
ModPerl::RegistryCooker::run
/usr/local/lib/perl/5.8.8/ModPerl/RegistryCooker.pm:169
ModPerl::RegistryCooker::default_handler
/usr/local/lib/perl/5.8.8/ModPerl/Registry.pm:30
ModPerl::Registry::handler -e:0
(eval) -e:0
I killed the process httpd.pid and I gave read and write permission
for all at
level biomart-perl (/home/renata/BioMart/biomart-perl). I started it
again by
/home/renata/BioMart/apache/httpd-2.2.3/bin/httpd -d $PWD -f
$PWD/conf/httpd.conf
and it's still not working.
Have you got any suggestions of how to solve this issue!
Many thanks, Renata
--
Renata da Silva Camargo
Departments of Mathematical Sciences & Biological Sciences
University of Essex
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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