On 7 Feb 2007, at 22:00, Amir Karger wrote:
From: Arek Kasprzyk [mailto:[EMAIL PROTECTED]
On 7 Feb 2007, at 21:09, Amir Karger wrote:
I'm downloading all valid dbSNPs from Biomart.org. I
selected ensembl
variation 42, selected the "valid only" restriction, and left the
default attributes.
When I ask for a count, there are 5.6M, which is about what
I got a few
months ago when I downloaded a slightly different version
from ensembl.
However, when I do the actual download, I get only 1.9M lines. I
downloaded as tsv as well as xml.
-Amir Karger
Amir,
can you try 'notify by email' option when downloading a file
and check if the problem still persists?
I used the notify by email mechanism for both. I've been finding that
more reliable than the regular download. I'll mention that I downloaded
a gz, which successfully unzipped, so I don't think it's a problem in
transmission.
-Amir
Hi Amir,
I am not sure what happened there. I just downloaded the file according
to your spec and got exactly what expected:
[EMAIL PROTECTED] files]$ gunzip martquery_0207220501_510.txt.gz
[EMAIL PROTECTED] files]$ wc martquery_0207220501_510.txt
5696142 17088430 124854968 martquery_0207220501_510.txt
so perhaps some temporarily glitch with the server. Could you try
again and if you have any further problem we'll investigate
a.
a.
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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