On 9 Feb 2007, at 15:37, Lalitha Krishnan wrote:
Hi Lalitha,
you can't convert directly form 0.3->0.5. You need to first upgrade
to 0.4.
To do that you need to use MEditor v 0.3 and dump your xml to a file.
Then you need to use MEditor v 0.4 and read it from a file and export
it to the
your mart database. You can stop at this point for now and try to use
biomart-perl v 0.5
to talk to your database as it will upgrade it 'on the fly' while
retrieving xml
I downloaded the source distribution of martj-0.4 :
cvs -d :pserver:[EMAIL PROTECTED]:/cvsroot/CVSmaster co -r
release-0_4 martj
Now I get the message:
"No datasets available for import - is this a BioMart compatible
schema? Missing Meta_configuration tables? Empty meta_config.."
Could you please send me the meta configuration table structure for
mart 0.4. I want to try upload the xml files ( with upload all)
after setting up an empty meta configuration tables. Dunno if that
would work if the xml structure itself has changed.
Hi Lalitha,
does this warning happen on connection or when you try to upload?
If the former is the case then simply ignore it and try to upload anyway
a.
PS. Please send you reply to mart-dev as I am away and will not be
able to respond until monday
Thanks,
Lalitha
------------------------------------------------------------------------
-------
Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
------------------------------------------------------------------------
-------
