-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 OK, so my second random thought for the day is.... appending a newline to the XML. (There is a newline appended in the Perl example, for reasons I can't remember but it may be important?)
trevor paterson (RI) wrote: > > the Appended ? doesnt seem to make a difference ( and is usually > associated with urlencoded GET requestss...??) > > as the request is hitting the correct processing script i dont think > this should be important > > Trevor Paterson > > -----Original Message----- > > > From: Richard Holland [mailto:[EMAIL PROTECTED] > > > The immediately obvious difference between the two is that the Perl has > a ? at the end of it, and the JS one doesn't. Could that be the problem? > > > trevor paterson (RI) wrote: >> >> aha >> >> realising that I have to specify the XML query as a parameter using >> 'query=' helps.... ;) rereading the example in the Documentation it >> does indeed say that! - but it isn't too clear till you have been >> through the whole process! >> >> So I can now get queries to run if I save my query as a file and use >> the perl script webExample.pl to send the query but it still doesnt >> work as a direct post made by javascript - the only thing that >> appears to differ is the HTML headers generated for the perl request >> versus the javascript request ( see below ) >> >> At least i now have a way of checking queries - and can try some >> programmatic queries in java now... >> >> I take it that the architecture of the Query.pl precludes a server >> wsdl being defined? >> >> thanks guys >> >> trevor >> >> *the perl generated http request that works......* >> >> POST /biomart/martservice? HTTP/1.1 >> TE: deflate,gzip;q=0.3 >> Connection: TE, close >> Host: 127.0.0.1:9099 >> User-Agent: libwww-perl/5.805 >> Content-Length: 290 >> >> query=<?xml version="1.0" encoding="UTF-8"?> >> <!DOCTYPE Query> >> <Query virtualSchemaName="biomartmaps" Header="1" count="" >> softwareVersion="0.5"> >> <Dataset name="maps" interface="default"> >> <Attribute name="name" /> >> <Filter name="name_chromosomes" value="1" /> >> </Dataset> >> </Query> >> >> >> *the javascript http request that doesn't work* >> >> POST /biomart/martservice HTTP/1.1 >> Host: 127.0.0.1:9099 >> User-Agent: Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.7.10) >> Gecko/20050909 Red Hat/1.7.10-1.1.3.2 >> Accept: >> text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/pl >> ain;q=0.8,image/png,*/*;q=0.5 >> Accept-Language: en-us,en;q=0.5 >> Accept-Encoding: gzip,deflate >> Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7 >> Keep-Alive: 300 >> Connection: keep-alive >> Content-Type: text/xml >> Content-Length: 278 >> Pragma: no-cache >> Cache-Control: no-cache >> >> query=<?xml version="1.0" encoding="UTF-8"?> >> <!DOCTYPE Query> >> <Query virtualSchemaName="biomartmaps" Header="1" count="" >> softwareVersion="0.5"> >> <Dataset name="maps" interface="default"> >> <Attribute name="name" /> >> <Filter name="name_chromosomes" value="1" /> >> </Dataset> >> </Query> >> >> >> >> >> >> >> >> >> >> >> >> >> Trevor Paterson >> >> Bioinformatics >> Roslin Institute >> Scotland EH25 9PS >> phone +44 (0) 131 5274477 >> http://www.roslin.ac.uk/ >> http://www.thearkdb.org/ >> http://www.comparagrid.org/ >> >> >> Roslin Institute is a company limited by guarantee, registered in >> Scotland (registered number SC157100) and a Scottish Charity >> (registered number SC023592). Our registered office is at Roslin, >> Midlothian, EH25 9PS. VAT registration number 847380013. >> >> The information contained in this e-mail (including any attachments) > is >> confidential and is intended for the use of the addressee only. The >> opinions expressed within this e-mail (including any attachments) are >> the opinions of the sender and do not necessarily constitute those of >> Roslin Institute (Edinburgh) ("the Institute") unless specifically >> stated by a sender who is duly authorised to do so on behalf of the >> Institute >> >> > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.2.2 (GNU/Linux) > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org > > iD8DBQFF3G1M4C5LeMEKA/QRAt/xAJ9lzmMRwfNyAcDKMYcoIvr8sEH69QCgiW25 > FVDpp4faycqBahKJ7uAbNaQ= > =JuKi > -----END PGP SIGNATURE----- > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFF3HLM4C5LeMEKA/QRAho8AJ4u/0kaXBr0bsAdw10HaKgbsPuTewCeLjQQ Uy0AdxbiYTaD955pysi9+Z8= =SmYb -----END PGP SIGNATURE-----
