Hi,
I did change the "httpd path" during configuration to point to httpd, now I am
getting an error of a different kind (see below).
(I would like to mention that am running ubuntu just incase this could bring
more light into the issue)
[Fri Mar 23 11:55:01 2007] [notice] Apache/2.2.4 (Unix) mod_perl/2.0.3
Perl/v5.8.8 configured -- resuming normal operations
[Fri Mar 23 11:55:06 2007] [error] [client 127.0.0.1] Use of uninitialized
value in concatenation (.) or string at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 636.\n, referer:
http://localhost:5555/
[Fri Mar 23 11:55:12 2007] [notice] caught SIGTERM, shutting down
Allan.
Richard Holland wrote:
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Hi.
I noticed this bit:
<snip>
Select either one of the detected httpd paths on the list, OR enter the
path you wish to use:
/usr/sbin/apache
/usr/sbin/apache2
[1]: /caprisa/usr/local/apache2/bin/apachectl
</snip>
It looks like you've given it the path to apachectl rather than apache.
It needs to know the path to the apache binary itself (sometimes also
called httpd or apache2), not the apachectl binary.
Although I can't say exactly what would happen if you gave it the
apachectl binary, as I've never tried it, its safer to try again with
the correct one before going any further.
Also, to do an absolutely clean reconfiguration after problems like
this, you need to append the '--clean' switch to the call to
configure.pl, eg.:
perl bin/configure.pl -r martRegistry.xml --clean
If you don't use the --clean switch then it will attempt to reuse the
cached compiled configuration from your previous attempt, which
potentially could cause problems if the previous attempt failed.
cheers,
Richard
[EMAIL PROTECTED] wrote:
Hi Syed,
I did a clean reconfiguration this time I received a warning during
configuration as follows.
perl bin/configure.pl -r conf/martDBLocation.xml
Do you want to install in API only mode [y/n] [n]:
Checking prerequisites ...[Looks good]
DO YOU WANT TO USE EXISTING SERVER CONFIGURATION [y/n] [y]: n
Checking several common Apache locations...done.
Select either one of the detected httpd paths on the list, OR enter the
path you wish to use:
/usr/sbin/apache
/usr/sbin/apache2
[1]: /caprisa/usr/local/apache2/bin/apachectl
Got usable Apache in /caprisa/usr/local/apache2/bin/apachectl, probing for
version & ModPerl configuration
Have Apache DSO-support and ModPerl library file present, configuring
ModPerl in httpd.conf.
Enter the server host OR default [ruth]:
Enter the server port OR default [5555]:
Enter proxy OR default :
Enter the required script location OR default [biomart]:
Libdir /home/ruby/prj/biomart/biomart-test2/lib is not in @INC, adding to
@INC
Processing Cached Registry:
/home/ruby/prj/biomart/biomart-test2/conf/cachedRegistries/martDBLocation.xml.cached
Then I receive an error when I try accessing the web application as follows.
[Thu Mar 22 17:32:06 2007] [error] [client 127.0.0.1] Use of uninitialized
value in concatenation (.) or string at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 636.\n, referer:
http://localhost:5555/
Am attaching the current conf/httpd.conf
Allan.
Hi Allan
I can see that there are configuration directives completely missing
from your httpd.conf.
Please do a clean check out, and reconfigure again.
Cheers
Syed
On Thu, 2007-03-22 at 17:01 +0200, allank wrote:
Hi all,
I am experiencing an error running Biomart 0.5, the web browser reports
internal server error a look at the logs (of my biomart-perl directory)
shows a "No such file or directory: exec of .. cgi-bin/martview.
The configuration process(perl bin/configure.pl -r
conf/myRegisteration.xml) goes through successfully, but I get an
internal server error when I try accessing the web resource of my newly
installed biomart via a browser.
Allan.
--
======================================
Syed Haider.
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
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