Hi Max Correct, It should not return nucleotide sequence. cc'ing to Benoit, who is expert on 'Compara Marts' and he would be back with his findings. I am not sure about Martshell, I'll get back to you when I find this out.
Cheers Syed On Tue, 2007-04-24 at 17:23 +0100, Maximilian Haeussler wrote: > Warning: this query would return ~665MB of data :) > > But I just wanted the peptide alignments, not 665 MB of strange > nucleotides... :-) > Well I think there is a problem with the martview output. Compare it > with the website martivew output (compara homology, human, ciona, > orthologs, features=alignments, no filter): > The output should be 15 MB and not genomic sequence... or maybe there > is something else that I don't know about the XML-parameters... > > Is there a way to do this with martshell? > > cheers, > Max > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
