Hi, I have just upgraded to 0.6 biomart perl-api and while trying to test the 'apiExample.pl' in the scripts folder it is throwing out the following error (using the apiExampleRegistry.xml) .......
default ... ensembl .................. 003/018 ... hsapiens_gene_ensembl..................... (WEB) www.biomart.org:80 ............ -> upgrading to 0.6 ... Content-type:text/html <html><body>XML error cannot read data or file, see log file ----------------------- also getting identical error with the 'registryURLPointer.xml' file The output of log file ...... ERROR: XML error in file "/home/basu/Work/biomart-perl/scripts/conf/mart_0_5_0_6.xsl": Couldn't open /home/basu/Work/biomart-perl/scripts/conf/mart_0_5_0_6.xsl: No such file or directory at /home/basu/My_perl/BioMart/Web/CGIXSLT.pm line 221 DATE: Tue Jun 19 18:18:29 2007 REMOTE_ADDR: PARAMETERS PASSED: source="temp.xml" style="/home/basu/Work/biomart-perl/scripts/conf/mart_0_5_0_6.xsl" ------------------------- I am running the program inside the 'scripts' folder and it seems to be looking for 'mart_0_5_0_6.xsl' file which is expected to be under a 'conf' folder relative from where the program is run. As i understand, biomart-perl api only requires the 'registry' file whose location is configurable. The example and rest of my scripts were running fine with previous version(0.5), so any idea how to get them running with the current one (0.6). -siddhartha
