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Hi, i try to install biomart-perl and all is ok, bat when i try to use
the registry downloaded from
http://www.biomart.org/biomart/martservice?type=registry with the
command "# perl bin/configure.pl -r conf/registry.xml" hi return me this message: " ERROR something wrong with your registry: Dataset 'gaculeatus_gene_ensembl' is duplicated in virtualSchema 'BioMart::Configuration::VirtualSchema=HASH(0x9992840)->name' Please rename datasets in meta_conf tables or separate conflicting datasets into different virtual schemas in defaultMartRegistry.xml Trace begun at /usr/local/biomart-perl/bin/../lib/BioMart/Initializer.pm line 1150 BioMart::Initializer::_populateRegistry('BioMart::Initializer=HASH(0x98fdb10)') called at /usr/local/biomart-perl/bin/../lib/BioMart/Initializer.pm line 244 BioMart::Initializer::_init('BioMart::Initializer=HASH(0x98fdb10)', 'registryFile', '/usr/local/biomart-perl/conf/registry.xml', 'action', 'cached', 'mode', 'memory') called at /usr/local/biomart-perl/bin/../lib/BioMart/Initializer.pm line 393 BioMart::Initializer::init_clean('BioMart::Initializer=HASH(0x98fdb10)', 'registryFile', '/usr/local/biomart-perl/conf/registry.xml', 'action', 'cached', 'mode', 'memory') called at /usr/local/biomart-perl/bin/../lib/BioMart/Initializer.pm line 344 BioMart::Initializer::init_cached('BioMart::Initializer=HASH(0x98fdb10)', 'registryFile', '/usr/local/biomart-perl/conf/registry.xml', 'action', 'cached', 'mode', 'memory') called at /usr/local/biomart-perl/bin/../lib/BioMart/Initializer.pm line 184 BioMart::Initializer::_new('BioMart::Initializer=HASH(0x98fdb10)', 'registryFile', '/usr/local/biomart-perl/conf/registry.xml', 'action', 'cached', 'mode', 'memory') called at /usr/local/biomart-perl/bin/../lib/BioMart/RootI.pm line 42 BioMart::RootI::new('BioMart::Initializer', 'registryFile', '/usr/local/biomart-perl/conf/registry.xml', 'action', 'cached', 'mode', 'memory') called at /usr/local/biomart-perl/bin/configureBioMart.pl line 302 eval {...} at /usr/local/biomart-perl/bin/configureBioMart.pl line 301 " you can help me? |
- [mart-dev] Error with myregistry Michele Muggiri
- Re: [mart-dev] Error with myregistry Arek Kasprzyk
- Re: [mart-dev] Error with myregistry Syed Haider
