-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hello again.
For any given combination of species A and B with type C, you will find only one entry in the downloaded CSV file. MartView then allows the user to select any combination of A and B for type C and will translate it to the appropriate single entry. So, for A.Gam and X.Tro with Orthologues, there is only one entry in the CSV file - compara_agam_xtro_ortholog. This is the entry that will get selected regardless of the order in which the user selects the two species involved. cheers, Richard Gianfranco Frau wrote: > Richard Holland ha scritto: >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> Sorry but I'm not sure I understand your question fully. Are you asking >> us how to restrict the list of species available, or how to add to it? >> What is the problem in HTML/JavaScript that you refer to? >> >> The list of second species and types is restricted to only those >> combinations that have corresponding datasets in the homology mart >> tables. If you can't find a particular combination, then it is because >> there is no dataset for that combination. >> >> > > May be I give you the worst example. > My problem is that I don't understand the logic of restrictions. > In some case I don't see any restriction! > > for example I can select: > > database: ENSEMBLE 45 HOMOLOGY (SANGER) > first specie: Xenopus tropicalis (JGI4.1) > second specie: Anopheles gambiae (AgamP3) > type: Paralogues > > for this selection I expect to find in the mart file a line like: > > > Tableset <internalname> Xenopus tropicalis (JGI4.1)|Anopheles > gambiae (AgamP3)|Paralogues > > with Xonopus before Anopheles, but I can find only these (truncated): > > TableSet compara_aaeg_xtro_orthologs Aedes aegypti > (AaegL1)|Xenopus tropicalis (JGI4.1)|Orthologues 1 TableSet > compara_aaeg_xtro_paralogs Aedes aegypti (AaegL1)|Xenopus tropicalis > (JGI4.1)|Paralogues 1 so, I change my question: > first and second species are hierarchically connected or not? In other > terms Is the order of first and second species important? > > > > >> (The vertical bar separation is unique to Compara mart and is not >> intended for use in other marts - it's a temporary solution whilst we >> think of a better way of doing things.) >> >> cheers, >> Richard >> >> > > > > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGuC/y4C5LeMEKA/QRAvX7AJ0Wycx1AS6Y3Yt46gLjtgcjlEohcACePMP5 BExCNiKRybu2va2gHiVvYDE= =/DwB -----END PGP SIGNATURE-----
