Hi Arek and Syed, I'm attaching the marteditor XML (sequence_mart.xml) plus the table dumps of the troublesome mart schema (done with mysqldump -T). The main table contains more data but I trimmed the dump to the first 10 rows.
Thanks, Razvan Arek Kasprzyk wrote: > > On 25 Aug 2007, at 00:42, Syed Haider wrote: > >> >>> I'm assuming it gets stuck because 4 out of the 6 meta% tables have no >>> data in it and I checked other mart dumps, and there was something in >>> each of it (only meta_template__xml__dm and meta_version__version__main >>> have an entry). >>> I'm not sure when are the rest of the meta% tables supposed to be >>> populated, but perl bin/configure.pl -r conf/myRegistry.xml fails - and >>> it seems that's because of the fact that the table >>> meta_conf__dataset__main doesn't have any rows. >>> > > > Hi Razvan, > similar problems have been reported recently. Is there a chance that in > addition > to what Syed asked you for you could also send us your mart database dump > (just tables without data would be fine) so we could run it here and check > if we can re-create your problem > > thanks, > a. > > > ------------------------------------------------------------------------------- > > Arek Kasprzyk > EMBL-European Bioinformatics Institute. > Wellcome Trust Genome Campus, Hinxton, > Cambridge CB10 1SD, UK. > Tel: +44-(0)1223-494606 > Fax: +44-(0)1223-494468 > ------------------------------------------------------------------------------- > > >
mapping_mart.tgz
Description: GNU Zip compressed data
begin:vcard fn:Razvan Sultana n:Sultana;Razvan org:Dana-Farber Cancer Institute;Biostatistics and Computational Biology adr;dom:;;44 Binney St;Boston;MA;02115 email;internet:[EMAIL PROTECTED] title:Bioinformatics Engineer tel;work:617-632-6773 x-mozilla-html:FALSE url:http://compbio.dfci.harvard.edu/tgi version:2.1 end:vcard
