> > If so, then i would suggest to delete the existing filter which is > > causing you the trouble and redeclare it. hopefully that will work > > out.
I deleted the existing filter list per your suggestion, and to save time I saved a copy of the original xml and was going to load the saved copy rather than recreate the filter list. -Andrew -----Original Message----- From: Syed Haider [mailto:[EMAIL PROTECTED] Sent: Wednesday, September 12, 2007 9:04 AM To: Vallejos, Andrew Cc: mart-dev Subject: RE: [mart-dev] Duplicate Entry Error Hi Andrew On Wed, 2007-09-12 at 08:57 -0500, Vallejos, Andrew wrote: > I cannot load my saved xml file(s). > > I get an error from the marteditor. > > "File does not contain valid configuration." thats not encouraging....this might be a problem with MartEditor. Is there a chance that you do not need to reload your xmls and you just connect to your database and do import. why do you have to use saved xmls ? > > -Andrew > > -----Original Message----- > From: Syed Haider [mailto:[EMAIL PROTECTED] > Sent: Wednesday, September 12, 2007 8:47 AM > To: Vallejos, Andrew > Cc: mart-dev > Subject: RE: [mart-dev] Duplicate Entry Error > > > > On Wed, 2007-09-12 at 08:43 -0500, Vallejos, Andrew wrote: > > perl bin/configure.pl --clean -r con/your_registry.xml --clean > > > > is the exact syntax that I use. Does it matter than the '--clean' is > in > > a different location? > > no, as long as its there, its fine. > did you try removing existing filter and adding a new one ? > > cheers > syed > > > > > -Andrew > > > > > > -----Original Message----- > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > Sent: Wednesday, September 12, 2007 4:57 AM > > To: Vallejos, Andrew; mart-dev > > Subject: RE: [mart-dev] Duplicate Entry Error > > > > Hi Andrew > > Could you please confirm if once doing the 'export' from MartEditor, > you > > do reconfigure BioMart > > > > perl bin/configure.pl -r con/your_registry.xml --clean > > > > and kill/restart your server ? > > > > If so, then i would suggest to delete the existing filter which is > > causing you the trouble and redeclare it. hopefully that will work > out. > > > > cheers > > syed > > > > > > On Tue, 2007-09-11 at 13:52 -0500, Vallejos, Andrew wrote: > > > Syed, > > > > > > Ok, so I am not getting the duplication error anymore. However, I > > have > > > filters that are not showing up. > > > > > > The chromosome filter for gene map v3.4 and the disease ontology > > filters > > > are not displaying on martview page. The chromosome I did get to > > > display once, but then it disappeared the next time I updated the > > file. > > > > > > -Andrew > > > > > > -----Original Message----- > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > Sent: Friday, September 07, 2007 3:34 AM > > > To: Vallejos, Andrew > > > Cc: [email protected] > > > Subject: Re: [mart-dev] Duplicate Entry Error > > > > > > Hi Andrew > > > > > > On Thu, 2007-09-06 at 15:44 -0500, Vallejos, Andrew wrote: > > > > We've recently installed a test v0.6 mart. However, now that I am > > > > using the v0.6 tools I keep receiving a "Remove Duplicates before > > > > generating Template" error. > > > > > > is it martEditor which throws this error ? If so, please send me > your > > > xmls. I assume you get this error when you 'export'. Please correct > me > > > if thats not the case. > > > > > > thanks > > > syed > > > > > > > > > > > > > > > > > > > > > > I have no idea why I am getting this error as I have no duplicates > > in > > > > my attribute tables, I've checked. > > > > > > > > > > > > > > > > -Andrew > > > > > > > > > > > > > > > > ====================== > > > > > > > > Andrew Vallejos > > > > > > > > Web Developer > > > > > > > > Medical College of Wisconsin > > > > > > > > 414-955-4104 > > > > > > > > [EMAIL PROTECTED] > > > > > > > > > > > > > > > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
