-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I've had a bit of a hand in BioSQL's development and wrote the BioJava interfaces to it. The 1.0 release is a formalisation of what has existed for quite some time now.
There's no reason why you can't martify a BioSQL database - MartBuilder can martify anything really as long as you point it at the right schema! I'd suggest the 'gene' table as a good starting point. cheers, Richard Amir Karger wrote: > Hi. > > I have no knowledge whatsoever about BioSQL, but v1.0 was just released. > But its description contains these intriguing lines: "BioSQL is a > generic, extensible relational model for sequences, sequence features, > their annotation, and ontology terms. It is also designed as the > interoperable persistence interface between the Bio* projects." > > BioSQL to Biomart translator anyone? It would be pretty cool if you > could take a bunch of EMBL genome .embl files and run a script on them > that would use Bioperl to throw them into BioSQL tables, and then > MartBuilder could create a mart out of them. > > http://news.open-bio.org/archives/2008_03.html#000094 > > Perhaps you already know all about this. > > -Amir > - -- Richard Holland (BioMart) EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK Tel. +44 (0)1223 494416 http://www.biomart.org/ http://www.biojava.org/ -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFH1T854C5LeMEKA/QRAqacAJ0enusbum+nzmuyYq+Izc+TIeSldQCeIBB9 3uYGcNhqSNkx4U0O76pJFVI= =fuNg -----END PGP SIGNATURE-----
