Isabelle, I just tried this query over BioMart web interface, works fine for me. Over to Taverna experts (cc'ing David).
syed On Fri, 2008-04-04 at 16:34 +0200, Isabelle Phan wrote: > Hello Syed, > > I am selecting Ensembl attributes: > Ensembl Gene ID > Gene name > Chromosome name > > over all genes (no filter). I notice that as soon as I run a BioMart query, > before I do any selection, the log looks as if it is looking up all data > from BioMart until the exception is thrown. > > I am running Taverna 1.7 out of the box; perhaps I should allocate more > memory for the java virtual machine (taverna sets the default to 300M) ? > > Isabelle > > Syed Haider wrote: > > Hi Isabelle, > > > > which attributes/filters you are trying to retrieve ? > > > > > > syed > > > > > > On Fri, 2008-04-04 at 15:55 +0200, Isabelle Phan wrote: > >> or oanatinus_snp > >> lookinf for oanatinus_snp > >> lookinf for oanatinus_snp > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
