The BioMart SOAP scripts are only available on the release-0_7 branch of /cvsroot/biomart/biomart-perl at cvs.sanger.ac.uk. They have not been committed to the HEAD/TRUNK. To get them, you need to make sure you've checked out the release-0_7 branch.
If you look in the cgi-bin folder inside biomart-perl and don't see martsoap.pl etc. present there, then you probably don't have the 0.7 branch checked out. cheers, Richard Allyson Lister wrote: > Hi all, > > I've made a local biomart installation, and have started with just the > default registry (accessing the msd and uniprot marts from the ebi), > though of course the plan later is to have my own marts etc. > > I can use martview successfully on my local install, but I cannot seem > to see the wsdl files that should be there according to the > documentation (as I now want to programmatically query my local biomart > install using SOAP). > > My local martview: > http://mygrid.ncl.ac.uk:9002/biomart/martview (nothing special yet, but > it is running and works) > What *should* give me the wsdl: > http://mygrid.ncl.ac.uk:9002/biomart/martwsdl > > Why am I not seeing anything here? Is there some extra step in the > installation that I would need to do in order to "install" the web > services aspect? Any help would be most appreciated. > > Thanks :) > > -- > Thanks, > Allyson :) > > Allyson Lister > Research Associate > Centre for Integrated Systems Biology for Ageing and Nutrition > Newcastle University > http://www.cisban.ac.uk > School of Computing Science > Newcastle University > Newcastle upon Tyne, NE1 7RU -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: [email protected] http://www.eaglegenomics.com/
